General information for g11411.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dynein light chain Tctex-type.
Parent gene
- The parent gene g11411 is located on chr_1: 16058126..16059151 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11411 | g11411.t1 | TTS | g11411.t1 | 16057658 | 16057658 |
| chr_1 | g11411 | g11411.t1 | isoform | g11411.t1 | 16058008 | 16059151 |
| chr_1 | g11411 | g11411.t1 | exon | g11411.t1.exon1 | 16058008 | 16058029 |
| chr_1 | g11411 | g11411.t1 | cds | g11411.t1.CDS1 | 16058008 | 16058029 |
| chr_1 | g11411 | g11411.t1 | exon | g11411.t1.exon2 | 16058127 | 16058331 |
| chr_1 | g11411 | g11411.t1 | cds | g11411.t1.CDS2 | 16058127 | 16058331 |
| chr_1 | g11411 | g11411.t1 | exon | g11411.t1.exon3 | 16058406 | 16058493 |
| chr_1 | g11411 | g11411.t1 | cds | g11411.t1.CDS3 | 16058406 | 16058493 |
| chr_1 | g11411 | g11411.t1 | exon | g11411.t1.exon4 | 16059134 | 16059151 |
| chr_1 | g11411 | g11411.t1 | cds | g11411.t1.CDS4 | 16059134 | 16059151 |
| chr_1 | g11411 | g11411.t1 | TSS | g11411.t1 | 16059251 | 16059251 |
Sequences
>g11411.t1 Gene=g11411 Length=333
ATGGATGACCGTGAAGAAAATCAATTTATCGTCGATGATGTCTCCAAAATTATAAAGGAA
GCAATAGAAAATACAATAGGCGGTAATGCATACCAACATGATAAGGTTAATGCATGGACA
GGTAATATAGTTGAAAATTGCCTTAACACTTTAACGAAACAACAAAAGCCATACAAGTAT
ATTGTAACATGCCTAATAATGCAAAAGAATGGAGCTGGATTGCATACTGCGTCAAGTTGC
TTTTGGAATAATGACACGGATGGATCATGTACTGTACGCTGGGAAAACAAATCAATGTAT
TGTATTACGAGTGTTTTTGGATTAGCAATTTAA
>g11411.t1 Gene=g11411 Length=110
MDDREENQFIVDDVSKIIKEAIENTIGGNAYQHDKVNAWTGNIVENCLNTLTKQQKPYKY
IVTCLIMQKNGAGLHTASSCFWNNDTDGSCTVRWENKSMYCITSVFGLAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11411.t1 | Gene3D | G3DSA:3.30.1140.40 | - | 11 | 110 | 0 |
| 2 | g11411.t1 | PANTHER | PTHR21255 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN | 4 | 110 | 0 |
| 3 | g11411.t1 | PANTHER | PTHR21255:SF19 | DYNEIN LIGHT CHAIN TCTEX-TYPE 1 | 4 | 110 | 0 |
| 1 | g11411.t1 | Pfam | PF03645 | Tctex-1 family | 14 | 108 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10420 (dynein light chain Tctex-type 1/3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
