General information for g11411.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dynein light chain Tctex-type.
Parent gene
- The parent gene g11411 is located on chr_1: 16058126..16059151 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11411 | g11411.t3 | TTS | g11411.t3 | 16057658 | 16057658 |
| chr_1 | g11411 | g11411.t3 | isoform | g11411.t3 | 16057695 | 16058489 |
| chr_1 | g11411 | g11411.t3 | exon | g11411.t3.exon1 | 16057695 | 16058029 |
| chr_1 | g11411 | g11411.t3 | cds | g11411.t3.CDS1 | 16058008 | 16058029 |
| chr_1 | g11411 | g11411.t3 | exon | g11411.t3.exon2 | 16058127 | 16058331 |
| chr_1 | g11411 | g11411.t3 | cds | g11411.t3.CDS2 | 16058127 | 16058239 |
| chr_1 | g11411 | g11411.t3 | exon | g11411.t3.exon3 | 16058406 | 16058489 |
| chr_1 | g11411 | g11411.t3 | TSS | g11411.t3 | 16059251 | 16059251 |
Sequences
>g11411.t3 Gene=g11411 Length=624
AATTTATCGTCGATGATGTCTCCAAAATTATAAAGGAAGCAATAGAAAATACAATAGGCG
GTAATGCATACCAACATGATAAGGTTAATGCATGGACAGGTAATATAGTTGAAAATTGCC
TTAACACTTTAACGAAACAACAAAAGCCATACAAGTATATTGTAACATGCCTAATAATGC
AAAAGAATGGAGCTGGATTGCATACTGCGTCAAGTTGCTTTTGGAATAATGACACGGATG
GATCATGTACTGTACGCTGGGAAAACAAATCAATGTATTGTATTACGAGTGTTTTTGGAT
TAGCAATTTAAAATAATGATGAAGGGAAAAATAATTATCAAATATTCCATTTTTTTTTCA
ATCTTTTTCTCTTTGGCGCTTTATATAAATTTTGACAAAATTCAATTTCGAATTAACTCA
ACTATGATAATATATCTTAATATTTTATTTAAAATCTAGAATGCTTAATAATTGAGAACA
TCTCGACAAAGTTCTTTTGTTATTTTCTGTCATTATTTATATTTAATGATTTTCAATTAC
TCTCAATTATGAAATTTAAAATTTAAACTAATTTTATATCATAGTTACTACTCATCACTT
TTGTTAAACCTTTTATTATTGAAA
>g11411.t3 Gene=g11411 Length=44
MQKNGAGLHTASSCFWNNDTDGSCTVRWENKSMYCITSVFGLAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11411.t3 | Gene3D | G3DSA:3.30.1140.40 | - | 1 | 44 | 0 |
| 2 | g11411.t3 | PANTHER | PTHR21255 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN | 1 | 44 | 0 |
| 3 | g11411.t3 | PANTHER | PTHR21255:SF51 | - | 1 | 44 | 0 |
| 1 | g11411.t3 | Pfam | PF03645 | Tctex-1 family | 1 | 42 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
