General information for g11423.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquitin-conjugating enzyme E2 H.
Parent gene
- The parent gene g11423 is located on chr_1: 16152230..16155422 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11423 | g11423.t16 | isoform | g11423.t16 | 16150736 | 16152748 |
| chr_1 | g11423 | g11423.t16 | exon | g11423.t16.exon1 | 16150736 | 16151967 |
| chr_1 | g11423 | g11423.t16 | TTS | g11423.t16 | 16150742 | 16150742 |
| chr_1 | g11423 | g11423.t16 | cds | g11423.t16.CDS1 | 16151846 | 16151967 |
| chr_1 | g11423 | g11423.t16 | exon | g11423.t16.exon2 | 16152320 | 16152406 |
| chr_1 | g11423 | g11423.t16 | cds | g11423.t16.CDS2 | 16152320 | 16152406 |
| chr_1 | g11423 | g11423.t16 | exon | g11423.t16.exon3 | 16152514 | 16152748 |
| chr_1 | g11423 | g11423.t16 | cds | g11423.t16.CDS3 | 16152514 | 16152643 |
| chr_1 | g11423 | g11423.t16 | TSS | g11423.t16 | 16152844 | 16152844 |
Sequences
>g11423.t16 Gene=g11423 Length=1554
TTTTAGCAAAATAAAACTCATTGGAAGTGAAATCGCTAAAAGCTGGAAGTCATTGAAATC
AATAGATTTTCTTAATTTCAAAGAAAGAAGGAAAAGAGTGACAAAATGTCAAGTCCAAGT
CAAGGAAAACGACGTATGGACACAGATGTTATCAAACTCATAGAAAGCAAACATGAAGTG
ACATTATTAGGATCAAATCTCAACGAATTCTGTGTAAAATTTTACGGACCAAGAGGAACT
GCTTATGAGTCAGGCGTCTGGAAAGTTCGAGTTCATCTTCCAGAACACTATCCTTTTAAA
TCGCCAAGCATTGGATTTATGAATTACGTCAAACGTTTTGCAACGGAGGAAGCACTCAGA
GAAACAGAGAAGGATGAACAAAGTTCTGATGAAAGCAGTATGAGCGATTTCAGTGAAGAT
GAAACTAAAGATATGGAATTATAACGATCAATTTTTGTTTTGGTTTGAATAGATTTTTTT
TGATATAGAGTTATATCAAGAGGGAGACGTTCATTCTAAATTCAAATTTGAATTGCCTTT
TTAGATATCTGAATATTTAGGTTTTAAAATCACGTCTGTTTAGAACTATTTAAATAATAG
TTTGCATTTATCAAAACAGTATATAAATTTAATATTTACAAAGTTAAAATTTAATGATGA
GAAAATTTTAAGTCCAAAAAATCCCGTCTTTCCTTTTCTCTATTATAAGAGTCGATTCTT
ATTATAAAAAAAACTAAGCACATCTTTAAAATTTTTATTTTTTCGGATTTTTGTTTTAAT
TTTTGTTTAACTAACCTATAATTTTTTTGCAAGATACGTTAGAAAGGGATTTTTCAATAC
TAAAGATTTTTAACAAAATATTGGAAGTTTTTGATTATTTTTAAATTTTAAAAAGTTCAA
TATTTTTTTCTGATATTTTATATCCTCTTATAATACATAAAAAAGGTTAGTTCTGCTTTT
TTTCAACTTATTGATCATTCAAAAATTTAAAATATTATAATATATTACTTATTATACCTA
AATATATATAGTGTTTTGAAAAAATCCACTCTTGAGAAAAATATTAATATTATAAGTAAT
TTATAAGTTTTATTATTTCATAAATAGGAGTAGAAGAAGAAAGTTTTTTATTATTTTTTA
ATTTTAAATTCATATTCGAGGCACAATGAATGAATTTTAAAAAATATCTTTGAAAAGTGA
TTTGATTTTTTGAAATGGCATGCAATTTGTCCACTACAAATATAAAGCGGACATATATTG
AACATTCTCTAATAATAAAAGAGTAATATATTAACAATTTGACTGTTTTAACCAAATTAA
AATTCATCTAATATTAAAATATTTTTAAGAGTGACAAAATCAAGGAAAAAAATCAATATA
TTTCCGTTTTATAAGATGTAGTATTTAAAATAAAGTTTGATTCAGGTATCTAATTGGGCA
ATAATAGAATTAATATTGAATGTTTCCCCCTTGATATTTATAATCATCTCGTCAATGTAA
ACAAGCTGTTAAAATAAATTTATCGTATTTCTCGTCTGAATTTGAGACAAAAAT
>g11423.t16 Gene=g11423 Length=112
MSSPSQGKRRMDTDVIKLIESKHEVTLLGSNLNEFCVKFYGPRGTAYESGVWKVRVHLPE
HYPFKSPSIGFMNYVKRFATEEALRETEKDEQSSDESSMSDFSEDETKDMEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11423.t16 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 6 | 85 | 2.6E-15 |
| 5 | g11423.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 112 | - |
| 2 | g11423.t16 | PANTHER | PTHR24068:SF128 | UBIQUITIN-CONJUGATING ENZYME E2 H | 7 | 74 | 2.8E-25 |
| 3 | g11423.t16 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 7 | 74 | 2.8E-25 |
| 1 | g11423.t16 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 23 | 73 | 2.6E-11 |
| 7 | g11423.t16 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 30 | 75 | 11.976 |
| 4 | g11423.t16 | SUPERFAMILY | SSF54495 | UBC-like | 7 | 74 | 1.27E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed