General information for g11423.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquitin-conjugating enzyme E2 H.
Parent gene
- The parent gene g11423 is located on chr_1: 16152230..16155422 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11423 | g11423.t21 | isoform | g11423.t21 | 16150736 | 16153055 |
| chr_1 | g11423 | g11423.t21 | exon | g11423.t21.exon1 | 16150736 | 16150784 |
| chr_1 | g11423 | g11423.t21 | TTS | g11423.t21 | 16150742 | 16150742 |
| chr_1 | g11423 | g11423.t21 | cds | g11423.t21.CDS1 | 16150778 | 16150784 |
| chr_1 | g11423 | g11423.t21 | exon | g11423.t21.exon2 | 16151859 | 16151967 |
| chr_1 | g11423 | g11423.t21 | cds | g11423.t21.CDS2 | 16151859 | 16151967 |
| chr_1 | g11423 | g11423.t21 | exon | g11423.t21.exon3 | 16152043 | 16152228 |
| chr_1 | g11423 | g11423.t21 | cds | g11423.t21.CDS3 | 16152043 | 16152228 |
| chr_1 | g11423 | g11423.t21 | exon | g11423.t21.exon4 | 16152293 | 16152406 |
| chr_1 | g11423 | g11423.t21 | cds | g11423.t21.CDS4 | 16152293 | 16152323 |
| chr_1 | g11423 | g11423.t21 | exon | g11423.t21.exon5 | 16152510 | 16152748 |
| chr_1 | g11423 | g11423.t21 | exon | g11423.t21.exon6 | 16152815 | 16153055 |
| chr_1 | g11423 | g11423.t21 | TSS | g11423.t21 | NA | NA |
Sequences
>g11423.t21 Gene=g11423 Length=938
AGTTGATATTTAAATTTCGTTATAATATTGCGCCATTAATATTTTCTCTTTATTTTTAAT
ATTTTACAAGGTTTATTTAAATAAAAATTACTATATAACTTATACAAAGTAATAATTTAC
TTAATATAATTGAAATTCAGCTAAAAAAACTCGTGAAAGTGCAATTAAAAACAATTGTCG
TCCCCCTTGAGAAAAAATCGATATATTTTCTGTTTATTACGATTTCAACAAAAACAAAAA
GTTTTAGCAAAATAAAACTCATTGGAAGTGAAATCGCTAAAAGCTGGAAGTCATTGAAAT
CAATAGATTTTCTTAATTTCAAAGAAAGAAGGAAAAGAGTGACAAAATGTCAAGTCCAAG
TCAAGGAAAACGACGTATGGACACAGATGTTATCAAACTCATAGAAAGCAAACATGAAGT
GACATTATTAGGATCAAATCTCAACGAATTCTGTGTAAAATTTTACGGACCAAGAGGTTT
GAACTGCTTATGAGTCAGGCGTCTGGAAAGTTCGAGTTCATCTTCCAGAACACTATCCTT
TTAAATCGCCAAGCATTGGATTTATGAATAAAATTTTCCATCCAAATATCGATGAAGTAT
CAGGTACTGTTTGTTTAGACGTGATAAATCAAGCATGGACAGCACTCTATGACCTTTCAA
ATATTTTCGAATCATTTCTTCCACAACTTCTCACATACCCGAATCCTATTGATCCTCTTA
ATGGTGATGCTGCTGCAATGTACCTACATAAACCTGAAGAATACAAGAAAAAAGTCACAG
ATTACGTCAAACGTTTTGCAACGGAGGAAGCACTCAGAGAAACAGAGAAGGATGAACAAA
GTTCTGATGAAAGCAGTATGAGCGATTTCAGTGAAGATGAAACTAAAGACTGTTAAAATA
AATTTATCGTATTTCTCGTCTGAATTTGAGACAAAAAT
>g11423.t21 Gene=g11423 Length=110
MNKIFHPNIDEVSGTVCLDVINQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMY
LHKPEEYKKKVTDYVKRFATEEALRETEKDEQSSDESSMSDFSEDETKDC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11423.t21 | CDD | cd00195 | UBCc | 1 | 75 | 9.62643E-27 |
| 5 | g11423.t21 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 85 | 7.1E-30 |
| 9 | g11423.t21 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 110 | - |
| 2 | g11423.t21 | PANTHER | PTHR24068:SF128 | UBIQUITIN-CONJUGATING ENZYME E2 H | 1 | 108 | 7.0E-42 |
| 3 | g11423.t21 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 1 | 108 | 7.0E-42 |
| 1 | g11423.t21 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 2 | 74 | 2.2E-19 |
| 7 | g11423.t21 | ProSitePatterns | PS00183 | Ubiquitin-conjugating enzymes active site. | 5 | 21 | - |
| 10 | g11423.t21 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 1 | 69 | 19.745 |
| 8 | g11423.t21 | SMART | SM00212 | ubc_7 | 1 | 80 | 8.9E-4 |
| 4 | g11423.t21 | SUPERFAMILY | SSF54495 | UBC-like | 2 | 81 | 3.33E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
