Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11424 g11424.t11 TSS g11424.t11 16153130 16153130
chr_1 g11424 g11424.t11 isoform g11424.t11 16153191 16154552
chr_1 g11424 g11424.t11 exon g11424.t11.exon1 16153191 16153196
chr_1 g11424 g11424.t11 exon g11424.t11.exon2 16153685 16153809
chr_1 g11424 g11424.t11 cds g11424.t11.CDS1 16153699 16153809
chr_1 g11424 g11424.t11 exon g11424.t11.exon3 16153894 16154479
chr_1 g11424 g11424.t11 cds g11424.t11.CDS2 16153894 16154479
chr_1 g11424 g11424.t11 exon g11424.t11.exon4 16154537 16154552
chr_1 g11424 g11424.t11 cds g11424.t11.CDS3 16154537 16154550
chr_1 g11424 g11424.t11 TTS g11424.t11 NA NA

Sequences

>g11424.t11 Gene=g11424 Length=733
TTTGTGAAAAAAAGGAAACGATGGCTTCAAATGTTGCAGAATTCTATCGCAATAAGAAAA
TTTTACTAACTGGTGCAACTGGCTTCATTGGCGTGGCCATTGTAGAAAAAATATTGCGAT
CATGCCCCGATATTTACATGCTGATTCGCTCAAAGAAGGGCAAATCTATTCAAGAACGTT
TACAAGACATTACAAAAAATTCTGTTTTCTCATTGTTACTTGAAGAACGGTCGCAAGATG
TATTTAATAAATTGATTCCTATTGAAGGAGATGTTGGCGAAGAAAACCTTGCATTATCAG
CCAGTGACCGTCAGTTGCTAATAGATAACGTCAATATTGTTATCCATTCTGCAGCAACTC
TTGATTTTCAGGCATCATTAAAACCAACTGTTTTAATTAATCTTTTGGGAACTCGACAAA
TAATGCAGTTATGCTCTCAAATGAAAAGTTTGGTGGCAATGACACATGTTTCGAGTGCTT
ATGTTAATTCATTTTTGCTTGAAACTGAAGAAATACTGTATCCAGCTCCAGAAGATCCTG
AAAAGGTCATTGAGCTTGTTAAAAATAAAACGGAAAGCGAGTTGGAAACTCTTACTCCTG
GTTTGATAAAGTCGCATCCAAATACATATACCTTTACGAAGCATTTAGCCGAGCATGAAG
TTAATAAATATGCGCAAAAATTTCCTTGCGCAATTGTTCGACCATCTATGATTACAGCGA
GTTGGATGGAACC

>g11424.t11 Gene=g11424 Length=237
MASNVAEFYRNKKILLTGATGFIGVAIVEKILRSCPDIYMLIRSKKGKSIQERLQDITKN
SVFSLLLEERSQDVFNKLIPIEGDVGEENLALSASDRQLLIDNVNIVIHSAATLDFQASL
KPTVLINLLGTRQIMQLCSQMKSLVAMTHVSSAYVNSFLLETEEILYPAPEDPEKVIELV
KNKTESELETLTPGLIKSHPNTYTFTKHLAEHEVNKYAQKFPCAIVRPSMITASWME

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g11424.t11 CDD cd05236 FAR-N_SDR_e 12 237 0
5 g11424.t11 Gene3D G3DSA:3.40.50.720 - 2 237 0
2 g11424.t11 PANTHER PTHR11011:SF27 FATTY ACYL-COA REDUCTASE CG8306-RELATED 2 237 0
3 g11424.t11 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 2 237 0
1 g11424.t11 Pfam PF07993 Male sterility protein 16 233 0
4 g11424.t11 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 3 235 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed