Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11424 g11424.t14 TSS g11424.t14 16153130 16153130
chr_1 g11424 g11424.t14 isoform g11424.t14 16153191 16155422
chr_1 g11424 g11424.t14 exon g11424.t14.exon1 16153191 16153196
chr_1 g11424 g11424.t14 exon g11424.t14.exon2 16153685 16153818
chr_1 g11424 g11424.t14 exon g11424.t14.exon3 16153894 16154963
chr_1 g11424 g11424.t14 cds g11424.t14.CDS1 16154545 16154963
chr_1 g11424 g11424.t14 exon g11424.t14.exon4 16155026 16155422
chr_1 g11424 g11424.t14 cds g11424.t14.CDS2 16155026 16155422
chr_1 g11424 g11424.t14 TTS g11424.t14 16155626 16155626

Sequences

>g11424.t14 Gene=g11424 Length=1607
TTTGTGAAAAAAAGGAAACGATGGCTTCAAATGTTGCAGAATTCTATCGCAATAAGAAAA
TTTTACTAACTGGTGCAACTGGCTTCATTGGCGTGGCCATTGTAGAAAAAATATTGCGAT
CATGCCCCGATGTGGATAAAATTTACATGCTGATTCGCTCAAAGAAGGGCAAATCTATTC
AAGAACGTTTACAAGACATTACAAAAAATTCTGTTTTCTCATTGTTACTTGAAGAACGGT
CGCAAGATGTATTTAATAAATTGATTCCTATTGAAGGAGATGTTGGCGAAGAAAACCTTG
CATTATCAGCCAGTGACCGTCAGTTGCTAATAGATAACGTCAATATTGTTATCCATTCTG
CAGCAACTCTTGATTTTCAGGCATCATTAAAACCAACTGTTTTAATTAATCTTTTGGGAA
CTCGACAAATAATGCAGTTATGCTCTCAAATGAAAAGTTTGGTGGCAATGACACATGTTT
CGAGTGCTTATGTTAATTCATTTTTGCTTGAAACTGAAGAAATACTGTATCCAGCTCCAG
AAGATCCTGAAAAGGTCATTGAGCTTGTTAAAAATAAAACGGAAAGCGAGTTGGAAACTC
TTACTCCTGGTTTGATAAAGTCGCATCCAAATACATATACCTTTACGAAGCATTTAGCCG
AGCATGAAGTTAATAAATATGCGCAAAAATTTCCTTGCGCAATTGTTCGACCATCTATGA
TTACAGGTATATTCGATTGGAAATTATAAAAATGCAATGTTAATTTTTGTCTTTCCAAAA
AAGCGAGTTGGATGGAACCTAGAAAAGGTTGGACAATTAGTAAAAATGGTCCACAAGGAT
TTTTGATGGGATCATCTAAAGGTGTTATTCGTCGTCTTCCCGTCAATACAAAGCTAATTT
ACGATTACATCCCTGTTGACACTGTTGTCAATGAAATTTTGGTTGCTGCTTATCATGTCG
CTCAAAAGAAATCTGGAGAAGTTTCGATTTTCCACTGCACTACTTCCACCTACAATCCTT
TCAAATGGGACAAAGTTGCTGATAAAACTAACGAGCTTTTACACATGTATCCACTTAAAT
CAGCCGTTTGGTATCCGCATTTAAAATTTGTTTCAAGCTTGATGCTTTTTAAAATTTCTG
CAATTTTTGTTCACTTTTTACCAGCATACATTCTTGATTTCATTACACGTTTATCTGGAG
GCCGACCAATTTTGGTTCGCCTGCATACCAATGTTTGGGAATCTTTGAAACTTCTTGAGA
AATTCATCTTTACTGAATGGAAATTTCATAACAAAAACACTTTAATGCTACACAAAACTA
TGTCTCCGACAGATCAGCAAACATTCAACATTGATGTCGGCAAGCTCGAATGGGAAGATT
ATTTCATTAATCTTGCTCAAGGTGTACGTCAGTATCTAAATAACGAAACATTAAAAACAC
TCCCAGCTGCAAAAAAGAAGGATAAAATTTTGTTGATTTTACACATTTTTTTACAAGTTG
GAATTCATTGTGCTATGTGGAAATTATTTTCATGCATTTTTGGTGTCTCAATGATGAAAT
GTATTTTTGCACTTCCAATTTCTTATTTCGTACTAAACATATTATAA

>g11424.t14 Gene=g11424 Length=271
MEPRKGWTISKNGPQGFLMGSSKGVIRRLPVNTKLIYDYIPVDTVVNEILVAAYHVAQKK
SGEVSIFHCTTSTYNPFKWDKVADKTNELLHMYPLKSAVWYPHLKFVSSLMLFKISAIFV
HFLPAYILDFITRLSGGRPILVRLHTNVWESLKLLEKFIFTEWKFHNKNTLMLHKTMSPT
DQQTFNIDVGKLEWEDYFINLAQGVRQYLNNETLKTLPAAKKKDKILLILHIFLQVGIHC
AMWKLFSCIFGVSMMKCIFALPISYFVLNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g11424.t14 CDD cd09071 FAR_C 119 209 4.64948E-33
7 g11424.t14 Gene3D G3DSA:3.40.50.720 - 2 112 3.0E-9
2 g11424.t14 PANTHER PTHR11011:SF27 FATTY ACYL-COA REDUCTASE CG8306-RELATED 2 255 5.7E-120
3 g11424.t14 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 2 255 5.7E-120
1 g11424.t14 Pfam PF03015 Male sterility protein 121 212 4.3E-30
10 g11424.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 105 -
14 g11424.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 106 128 -
9 g11424.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 129 225 -
13 g11424.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 226 246 -
11 g11424.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 247 251 -
12 g11424.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 252 270 -
8 g11424.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 271 271 -
5 g11424.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 106 128 -
4 g11424.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 226 243 -
6 g11424.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 248 270 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values