Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11424 g11424.t17 TSS g11424.t17 16153130 16153130
chr_1 g11424 g11424.t17 isoform g11424.t17 16153191 16155734
chr_1 g11424 g11424.t17 exon g11424.t17.exon1 16153191 16153196
chr_1 g11424 g11424.t17 exon g11424.t17.exon2 16153685 16153818
chr_1 g11424 g11424.t17 cds g11424.t17.CDS1 16153699 16153818
chr_1 g11424 g11424.t17 exon g11424.t17.exon3 16153894 16154479
chr_1 g11424 g11424.t17 cds g11424.t17.CDS2 16153894 16154479
chr_1 g11424 g11424.t17 exon g11424.t17.exon4 16154537 16154963
chr_1 g11424 g11424.t17 cds g11424.t17.CDS3 16154537 16154963
chr_1 g11424 g11424.t17 exon g11424.t17.exon5 16155026 16155404
chr_1 g11424 g11424.t17 cds g11424.t17.CDS4 16155026 16155404
chr_1 g11424 g11424.t17 exon g11424.t17.exon6 16155565 16155734
chr_1 g11424 g11424.t17 cds g11424.t17.CDS5 16155565 16155570
chr_1 g11424 g11424.t17 TTS g11424.t17 NA NA

Sequences

>g11424.t17 Gene=g11424 Length=1702
TTTGTGAAAAAAAGGAAACGATGGCTTCAAATGTTGCAGAATTCTATCGCAATAAGAAAA
TTTTACTAACTGGTGCAACTGGCTTCATTGGCGTGGCCATTGTAGAAAAAATATTGCGAT
CATGCCCCGATGTGGATAAAATTTACATGCTGATTCGCTCAAAGAAGGGCAAATCTATTC
AAGAACGTTTACAAGACATTACAAAAAATTCTGTTTTCTCATTGTTACTTGAAGAACGGT
CGCAAGATGTATTTAATAAATTGATTCCTATTGAAGGAGATGTTGGCGAAGAAAACCTTG
CATTATCAGCCAGTGACCGTCAGTTGCTAATAGATAACGTCAATATTGTTATCCATTCTG
CAGCAACTCTTGATTTTCAGGCATCATTAAAACCAACTGTTTTAATTAATCTTTTGGGAA
CTCGACAAATAATGCAGTTATGCTCTCAAATGAAAAGTTTGGTGGCAATGACACATGTTT
CGAGTGCTTATGTTAATTCATTTTTGCTTGAAACTGAAGAAATACTGTATCCAGCTCCAG
AAGATCCTGAAAAGGTCATTGAGCTTGTTAAAAATAAAACGGAAAGCGAGTTGGAAACTC
TTACTCCTGGTTTGATAAAGTCGCATCCAAATACATATACCTTTACGAAGCATTTAGCCG
AGCATGAAGTTAATAAATATGCGCAAAAATTTCCTTGCGCAATTGTTCGACCATCTATGA
TTACAGCGAGTTGGATGGAACCTAGAAAAGGTTGGACAATTAGTAAAAATGGTCCACAAG
GATTTTTGATGGGATCATCTAAAGGTGTTATTCGTCGTCTTCCCGTCAATACAAAGCTAA
TTTACGATTACATCCCTGTTGACACTGTTGTCAATGAAATTTTGGTTGCTGCTTATCATG
TCGCTCAAAAGAAATCTGGAGAAGTTTCGATTTTCCACTGCACTACTTCCACCTACAATC
CTTTCAAATGGGACAAAGTTGCTGATAAAACTAACGAGCTTTTACACATGTATCCACTTA
AATCAGCCGTTTGGTATCCGCATTTAAAATTTGTTTCAAGCTTGATGCTTTTTAAAATTT
CTGCAATTTTTGTTCACTTTTTACCAGCATACATTCTTGATTTCATTACACGTTTATCTG
GAGGCCGACCAATTTTGGTTCGCCTGCATACCAATGTTTGGGAATCTTTGAAACTTCTTG
AGAAATTCATCTTTACTGAATGGAAATTTCATAACAAAAACACTTTAATGCTACACAAAA
CTATGTCTCCGACAGATCAGCAAACATTCAACATTGATGTCGGCAAGCTCGAATGGGAAG
ATTATTTCATTAATCTTGCTCAAGGTGTACGTCAGTATCTAAATAACGAAACATTAAAAA
CACTCCCAGCTGCAAAAAAGAAGGATAAAATTTTGTTGATTTTACACATTTTTTTACAAG
TTGGAATTCATTGTGCTATGTGGAAATTATTTTCATGCATTTTTGGTGTCTCAATGATGA
AATGTATTTTTGCACTTCCAATTTCTTATTTCTGTTAATAGATAAGGATCGTATAATAAA
TTTTTGTAACAAAAAAATCTGATTGTGGTAGTTGAAGAATTTGTGTTTTATTTGACTAAT
AATTTACAGGCATTTCACATTAACTTTCATAATTTTTAAGTAAATTAATCTTTCCCCATT
ACATATTTTATTGTAAATTTAT

>g11424.t17 Gene=g11424 Length=505
MASNVAEFYRNKKILLTGATGFIGVAIVEKILRSCPDVDKIYMLIRSKKGKSIQERLQDI
TKNSVFSLLLEERSQDVFNKLIPIEGDVGEENLALSASDRQLLIDNVNIVIHSAATLDFQ
ASLKPTVLINLLGTRQIMQLCSQMKSLVAMTHVSSAYVNSFLLETEEILYPAPEDPEKVI
ELVKNKTESELETLTPGLIKSHPNTYTFTKHLAEHEVNKYAQKFPCAIVRPSMITASWME
PRKGWTISKNGPQGFLMGSSKGVIRRLPVNTKLIYDYIPVDTVVNEILVAAYHVAQKKSG
EVSIFHCTTSTYNPFKWDKVADKTNELLHMYPLKSAVWYPHLKFVSSLMLFKISAIFVHF
LPAYILDFITRLSGGRPILVRLHTNVWESLKLLEKFIFTEWKFHNKNTLMLHKTMSPTDQ
QTFNIDVGKLEWEDYFINLAQGVRQYLNNETLKTLPAAKKKDKILLILHIFLQVGIHCAM
WKLFSCIFGVSMMKCIFALPISYFC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g11424.t17 CDD cd05236 FAR-N_SDR_e 12 332 2.69997E-133
13 g11424.t17 CDD cd09071 FAR_C 357 447 3.71519E-33
6 g11424.t17 Gene3D G3DSA:3.40.50.720 - 2 350 3.8E-76
3 g11424.t17 PANTHER PTHR11011:SF27 FATTY ACYL-COA REDUCTASE CG8306-RELATED 2 491 2.0E-242
4 g11424.t17 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 2 491 2.0E-242
1 g11424.t17 Pfam PF07993 Male sterility protein 16 286 6.4E-72
2 g11424.t17 Pfam PF03015 Male sterility protein 359 450 1.3E-29
8 g11424.t17 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 343 -
11 g11424.t17 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 344 366 -
7 g11424.t17 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 367 463 -
10 g11424.t17 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 464 484 -
9 g11424.t17 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 485 505 -
5 g11424.t17 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 3 296 1.05E-30

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values