Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11424 g11424.t19 TSS g11424.t19 16153130 16153130
chr_1 g11424 g11424.t19 isoform g11424.t19 16153684 16154767
chr_1 g11424 g11424.t19 exon g11424.t19.exon1 16153684 16153818
chr_1 g11424 g11424.t19 cds g11424.t19.CDS1 16153699 16153818
chr_1 g11424 g11424.t19 exon g11424.t19.exon2 16153894 16154479
chr_1 g11424 g11424.t19 cds g11424.t19.CDS2 16153894 16154479
chr_1 g11424 g11424.t19 exon g11424.t19.exon3 16154537 16154767
chr_1 g11424 g11424.t19 cds g11424.t19.CDS3 16154537 16154766
chr_1 g11424 g11424.t19 TTS g11424.t19 16155626 16155626

Sequences

>g11424.t19 Gene=g11424 Length=952
GAAAAAAAGGAAACGATGGCTTCAAATGTTGCAGAATTCTATCGCAATAAGAAAATTTTA
CTAACTGGTGCAACTGGCTTCATTGGCGTGGCCATTGTAGAAAAAATATTGCGATCATGC
CCCGATGTGGATAAAATTTACATGCTGATTCGCTCAAAGAAGGGCAAATCTATTCAAGAA
CGTTTACAAGACATTACAAAAAATTCTGTTTTCTCATTGTTACTTGAAGAACGGTCGCAA
GATGTATTTAATAAATTGATTCCTATTGAAGGAGATGTTGGCGAAGAAAACCTTGCATTA
TCAGCCAGTGACCGTCAGTTGCTAATAGATAACGTCAATATTGTTATCCATTCTGCAGCA
ACTCTTGATTTTCAGGCATCATTAAAACCAACTGTTTTAATTAATCTTTTGGGAACTCGA
CAAATAATGCAGTTATGCTCTCAAATGAAAAGTTTGGTGGCAATGACACATGTTTCGAGT
GCTTATGTTAATTCATTTTTGCTTGAAACTGAAGAAATACTGTATCCAGCTCCAGAAGAT
CCTGAAAAGGTCATTGAGCTTGTTAAAAATAAAACGGAAAGCGAGTTGGAAACTCTTACT
CCTGGTTTGATAAAGTCGCATCCAAATACATATACCTTTACGAAGCATTTAGCCGAGCAT
GAAGTTAATAAATATGCGCAAAAATTTCCTTGCGCAATTGTTCGACCATCTATGATTACA
GCGAGTTGGATGGAACCTAGAAAAGGTTGGACAATTAGTAAAAATGGTCCACAAGGATTT
TTGATGGGATCATCTAAAGGTGTTATTCGTCGTCTTCCCGTCAATACAAAGCTAATTTAC
GATTACATCCCTGTTGACACTGTTGTCAATGAAATTTTGGTTGCTGCTTATCATGTCGCT
CAAAAGAAATCTGGAGAAGTTTCGATTTTCCACTGCACTACTTCCACCTACA

>g11424.t19 Gene=g11424 Length=312
MASNVAEFYRNKKILLTGATGFIGVAIVEKILRSCPDVDKIYMLIRSKKGKSIQERLQDI
TKNSVFSLLLEERSQDVFNKLIPIEGDVGEENLALSASDRQLLIDNVNIVIHSAATLDFQ
ASLKPTVLINLLGTRQIMQLCSQMKSLVAMTHVSSAYVNSFLLETEEILYPAPEDPEKVI
ELVKNKTESELETLTPGLIKSHPNTYTFTKHLAEHEVNKYAQKFPCAIVRPSMITASWME
PRKGWTISKNGPQGFLMGSSKGVIRRLPVNTKLIYDYIPVDTVVNEILVAAYHVAQKKSG
EVSIFHCTTSTY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g11424.t19 CDD cd05236 FAR-N_SDR_e 12 312 0
5 g11424.t19 Gene3D G3DSA:3.40.50.720 - 2 312 0
2 g11424.t19 PANTHER PTHR11011:SF27 FATTY ACYL-COA REDUCTASE CG8306-RELATED 2 312 0
3 g11424.t19 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 2 312 0
1 g11424.t19 Pfam PF07993 Male sterility protein 16 286 0
4 g11424.t19 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 3 296 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed