General information for g11424.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.
Parent gene
- The parent gene g11424 is located on chr_1: 16155115..16155734 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11424 | g11424.t21 | TSS | g11424.t21 | 16153130 | 16153130 |
| chr_1 | g11424 | g11424.t21 | isoform | g11424.t21 | 16153699 | 16154767 |
| chr_1 | g11424 | g11424.t21 | exon | g11424.t21.exon1 | 16153699 | 16154479 |
| chr_1 | g11424 | g11424.t21 | cds | g11424.t21.CDS1 | 16153900 | 16154479 |
| chr_1 | g11424 | g11424.t21 | exon | g11424.t21.exon2 | 16154537 | 16154767 |
| chr_1 | g11424 | g11424.t21 | cds | g11424.t21.CDS2 | 16154537 | 16154766 |
| chr_1 | g11424 | g11424.t21 | TTS | g11424.t21 | 16155626 | 16155626 |
Sequences
>g11424.t21 Gene=g11424 Length=1012
ATGGCTTCAAATGTTGCAGAATTCTATCGCAATAAGAAAATTTTACTAACTGGTGCAACT
GGCTTCATTGGCGTGGCCATTGTAGAAAAAATATTGCGATCATGCCCCGATGTGGATAAA
GTAATTAAAAAGATATAAAATTCATAATTTACGTTACCAAAAAAATTGTACAAATTTTTT
TTTACTATTTAACAGATTTACATGCTGATTCGCTCAAAGAAGGGCAAATCTATTCAAGAA
CGTTTACAAGACATTACAAAAAATTCTGTTTTCTCATTGTTACTTGAAGAACGGTCGCAA
GATGTATTTAATAAATTGATTCCTATTGAAGGAGATGTTGGCGAAGAAAACCTTGCATTA
TCAGCCAGTGACCGTCAGTTGCTAATAGATAACGTCAATATTGTTATCCATTCTGCAGCA
ACTCTTGATTTTCAGGCATCATTAAAACCAACTGTTTTAATTAATCTTTTGGGAACTCGA
CAAATAATGCAGTTATGCTCTCAAATGAAAAGTTTGGTGGCAATGACACATGTTTCGAGT
GCTTATGTTAATTCATTTTTGCTTGAAACTGAAGAAATACTGTATCCAGCTCCAGAAGAT
CCTGAAAAGGTCATTGAGCTTGTTAAAAATAAAACGGAAAGCGAGTTGGAAACTCTTACT
CCTGGTTTGATAAAGTCGCATCCAAATACATATACCTTTACGAAGCATTTAGCCGAGCAT
GAAGTTAATAAATATGCGCAAAAATTTCCTTGCGCAATTGTTCGACCATCTATGATTACA
GCGAGTTGGATGGAACCTAGAAAAGGTTGGACAATTAGTAAAAATGGTCCACAAGGATTT
TTGATGGGATCATCTAAAGGTGTTATTCGTCGTCTTCCCGTCAATACAAAGCTAATTTAC
GATTACATCCCTGTTGACACTGTTGTCAATGAAATTTTGGTTGCTGCTTATCATGTCGCT
CAAAAGAAATCTGGAGAAGTTTCGATTTTCCACTGCACTACTTCCACCTACA
>g11424.t21 Gene=g11424 Length=270
MLIRSKKGKSIQERLQDITKNSVFSLLLEERSQDVFNKLIPIEGDVGEENLALSASDRQL
LIDNVNIVIHSAATLDFQASLKPTVLINLLGTRQIMQLCSQMKSLVAMTHVSSAYVNSFL
LETEEILYPAPEDPEKVIELVKNKTESELETLTPGLIKSHPNTYTFTKHLAEHEVNKYAQ
KFPCAIVRPSMITASWMEPRKGWTISKNGPQGFLMGSSKGVIRRLPVNTKLIYDYIPVDT
VVNEILVAAYHVAQKKSGEVSIFHCTTSTY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11424.t21 | CDD | cd05236 | FAR-N_SDR_e | 2 | 270 | 0 |
| 5 | g11424.t21 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 270 | 0 |
| 2 | g11424.t21 | PANTHER | PTHR11011:SF27 | FATTY ACYL-COA REDUCTASE CG8306-RELATED | 1 | 270 | 0 |
| 3 | g11424.t21 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 1 | 270 | 0 |
| 1 | g11424.t21 | Pfam | PF07993 | Male sterility protein | 1 | 244 | 0 |
| 4 | g11424.t21 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 4 | 268 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed