General information for g11424.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.
Parent gene
- The parent gene g11424 is located on chr_1: 16155115..16155734 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11424 | g11424.t22 | TSS | g11424.t22 | 16153130 | 16153130 |
| chr_1 | g11424 | g11424.t22 | isoform | g11424.t22 | 16153699 | 16155422 |
| chr_1 | g11424 | g11424.t22 | exon | g11424.t22.exon1 | 16153699 | 16153818 |
| chr_1 | g11424 | g11424.t22 | exon | g11424.t22.exon2 | 16153894 | 16154479 |
| chr_1 | g11424 | g11424.t22 | exon | g11424.t22.exon3 | 16154541 | 16154963 |
| chr_1 | g11424 | g11424.t22 | cds | g11424.t22.CDS1 | 16154599 | 16154963 |
| chr_1 | g11424 | g11424.t22 | exon | g11424.t22.exon4 | 16155026 | 16155422 |
| chr_1 | g11424 | g11424.t22 | cds | g11424.t22.CDS2 | 16155026 | 16155422 |
| chr_1 | g11424 | g11424.t22 | TTS | g11424.t22 | 16155626 | 16155626 |
Sequences
>g11424.t22 Gene=g11424 Length=1526
ATGGCTTCAAATGTTGCAGAATTCTATCGCAATAAGAAAATTTTACTAACTGGTGCAACT
GGCTTCATTGGCGTGGCCATTGTAGAAAAAATATTGCGATCATGCCCCGATGTGGATAAA
ATTTACATGCTGATTCGCTCAAAGAAGGGCAAATCTATTCAAGAACGTTTACAAGACATT
ACAAAAAATTCTGTTTTCTCATTGTTACTTGAAGAACGGTCGCAAGATGTATTTAATAAA
TTGATTCCTATTGAAGGAGATGTTGGCGAAGAAAACCTTGCATTATCAGCCAGTGACCGT
CAGTTGCTAATAGATAACGTCAATATTGTTATCCATTCTGCAGCAACTCTTGATTTTCAG
GCATCATTAAAACCAACTGTTTTAATTAATCTTTTGGGAACTCGACAAATAATGCAGTTA
TGCTCTCAAATGAAAAGTTTGGTGGCAATGACACATGTTTCGAGTGCTTATGTTAATTCA
TTTTTGCTTGAAACTGAAGAAATACTGTATCCAGCTCCAGAAGATCCTGAAAAGGTCATT
GAGCTTGTTAAAAATAAAACGGAAAGCGAGTTGGAAACTCTTACTCCTGGTTTGATAAAG
TCGCATCCAAATACATATACCTTTACGAAGCATTTAGCCGAGCATGAAGTTAATAAATAT
GCGCAAAAATTTCCTTGCGCAATTGTTCGACCATCTATGATTACAGTTGGATGGAACCTA
GAAAAGGTTGGACAATTAGTAAAAATGGTCCACAAGGATTTTTGATGGGATCATCTAAAG
GTGTTATTCGTCGTCTTCCCGTCAATACAAAGCTAATTTACGATTACATCCCTGTTGACA
CTGTTGTCAATGAAATTTTGGTTGCTGCTTATCATGTCGCTCAAAAGAAATCTGGAGAAG
TTTCGATTTTCCACTGCACTACTTCCACCTACAATCCTTTCAAATGGGACAAAGTTGCTG
ATAAAACTAACGAGCTTTTACACATGTATCCACTTAAATCAGCCGTTTGGTATCCGCATT
TAAAATTTGTTTCAAGCTTGATGCTTTTTAAAATTTCTGCAATTTTTGTTCACTTTTTAC
CAGCATACATTCTTGATTTCATTACACGTTTATCTGGAGGCCGACCAATTTTGGTTCGCC
TGCATACCAATGTTTGGGAATCTTTGAAACTTCTTGAGAAATTCATCTTTACTGAATGGA
AATTTCATAACAAAAACACTTTAATGCTACACAAAACTATGTCTCCGACAGATCAGCAAA
CATTCAACATTGATGTCGGCAAGCTCGAATGGGAAGATTATTTCATTAATCTTGCTCAAG
GTGTACGTCAGTATCTAAATAACGAAACATTAAAAACACTCCCAGCTGCAAAAAAGAAGG
ATAAAATTTTGTTGATTTTACACATTTTTTTACAAGTTGGAATTCATTGTGCTATGTGGA
AATTATTTTCATGCATTTTTGGTGTCTCAATGATGAAATGTATTTTTGCACTTCCAATTT
CTTATTTCGTACTAAACATATTATAA
>g11424.t22 Gene=g11424 Length=253
MGSSKGVIRRLPVNTKLIYDYIPVDTVVNEILVAAYHVAQKKSGEVSIFHCTTSTYNPFK
WDKVADKTNELLHMYPLKSAVWYPHLKFVSSLMLFKISAIFVHFLPAYILDFITRLSGGR
PILVRLHTNVWESLKLLEKFIFTEWKFHNKNTLMLHKTMSPTDQQTFNIDVGKLEWEDYF
INLAQGVRQYLNNETLKTLPAAKKKDKILLILHIFLQVGIHCAMWKLFSCIFGVSMMKCI
FALPISYFVLNIL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g11424.t22 | CDD | cd09071 | FAR_C | 101 | 191 | 6.12046E-33 |
| 6 | g11424.t22 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 94 | 4.3E-8 |
| 2 | g11424.t22 | PANTHER | PTHR11011:SF27 | FATTY ACYL-COA REDUCTASE CG8306-RELATED | 1 | 237 | 7.1E-107 |
| 3 | g11424.t22 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 1 | 237 | 7.1E-107 |
| 1 | g11424.t22 | Pfam | PF03015 | Male sterility protein | 103 | 194 | 3.8E-30 |
| 9 | g11424.t22 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 87 | - |
| 13 | g11424.t22 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
| 8 | g11424.t22 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 111 | 207 | - |
| 12 | g11424.t22 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 208 | 228 | - |
| 10 | g11424.t22 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 229 | 233 | - |
| 11 | g11424.t22 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 234 | 252 | - |
| 7 | g11424.t22 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 253 | 253 | - |
| 5 | g11424.t22 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
| 4 | g11424.t22 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 228 | 250 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed