Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11424 g11424.t26 isoform g11424.t26 16155115 16155565
chr_1 g11424 g11424.t26 exon g11424.t26.exon1 16155115 16155565
chr_1 g11424 g11424.t26 cds g11424.t26.CDS1 16155120 16155422
chr_1 g11424 g11424.t26 TTS g11424.t26 16155626 16155626
chr_1 g11424 g11424.t26 TSS g11424.t26 NA NA

Sequences

>g11424.t26 Gene=g11424 Length=451
CTTTAATGCTACACAAAACTATGTCTCCGACAGATCAGCAAACATTCAACATTGATGTCG
GCAAGCTCGAATGGGAAGATTATTTCATTAATCTTGCTCAAGGTGTACGTCAGTATCTAA
ATAACGAAACATTAAAAACACTCCCAGCTGCAAAAAAGAAGGATAAAATTTTGTTGATTT
TACACATTTTTTTACAAGTTGGAATTCATTGTGCTATGTGGAAATTATTTTCATGCATTT
TTGGTGTCTCAATGATGAAATGTATTTTTGCACTTCCAATTTCTTATTTCGTACTAAACA
TATTATAAATTATCATTAAAAATGATAACGATATATTTTTCTAAATCAAATAAGGTATTA
AATTGTGAGATTTTTATGGTTATTGGGGCATTCATTAAAATGTACTTTCTCAAAATAAAA
AATTATTTGATGTTTCTCATTTATAACATTT

>g11424.t26 Gene=g11424 Length=100
MLHKTMSPTDQQTFNIDVGKLEWEDYFINLAQGVRQYLNNETLKTLPAAKKKDKILLILH
IFLQVGIHCAMWKLFSCIFGVSMMKCIFALPISYFVLNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g11424.t26 PANTHER PTHR11011:SF27 FATTY ACYL-COA REDUCTASE CG8306-RELATED 2 85 5.7E-23
3 g11424.t26 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 2 85 5.7E-23
1 g11424.t26 Pfam PF03015 Male sterility protein 2 41 1.2E-10
7 g11424.t26 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 54 -
9 g11424.t26 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 55 75 -
8 g11424.t26 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 76 80 -
10 g11424.t26 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 81 99 -
6 g11424.t26 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 100 100 -
5 g11424.t26 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 55 72 -
4 g11424.t26 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 77 99 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values