General information for g11424.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.
Parent gene
- The parent gene g11424 is located on chr_1: 16155115..16155734 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11424 | g11424.t4 | TSS | g11424.t4 | 16152069 | 16152069 |
| chr_1 | g11424 | g11424.t4 | isoform | g11424.t4 | 16153055 | 16154947 |
| chr_1 | g11424 | g11424.t4 | exon | g11424.t4.exon1 | 16153055 | 16153196 |
| chr_1 | g11424 | g11424.t4 | exon | g11424.t4.exon2 | 16153685 | 16153818 |
| chr_1 | g11424 | g11424.t4 | cds | g11424.t4.CDS1 | 16153699 | 16153818 |
| chr_1 | g11424 | g11424.t4 | exon | g11424.t4.exon3 | 16153894 | 16154479 |
| chr_1 | g11424 | g11424.t4 | cds | g11424.t4.CDS2 | 16153894 | 16154479 |
| chr_1 | g11424 | g11424.t4 | exon | g11424.t4.exon4 | 16154537 | 16154947 |
| chr_1 | g11424 | g11424.t4 | cds | g11424.t4.CDS3 | 16154537 | 16154946 |
| chr_1 | g11424 | g11424.t4 | TTS | g11424.t4 | 16155626 | 16155626 |
Sequences
>g11424.t4 Gene=g11424 Length=1273
TAATAACCGTTAAGATATGATGAAAAAATTATGACAGTATTCAAGCAGTGAATTTTTGGT
GAAGTTGTTATTATTTAGTTGTGTGTGAGCGATCACTCGAGAAAGTTTGTTAGATTATTG
TTTTTCGTTAATCATTTTTGTGAAAAAAAGGAAACGATGGCTTCAAATGTTGCAGAATTC
TATCGCAATAAGAAAATTTTACTAACTGGTGCAACTGGCTTCATTGGCGTGGCCATTGTA
GAAAAAATATTGCGATCATGCCCCGATGTGGATAAAATTTACATGCTGATTCGCTCAAAG
AAGGGCAAATCTATTCAAGAACGTTTACAAGACATTACAAAAAATTCTGTTTTCTCATTG
TTACTTGAAGAACGGTCGCAAGATGTATTTAATAAATTGATTCCTATTGAAGGAGATGTT
GGCGAAGAAAACCTTGCATTATCAGCCAGTGACCGTCAGTTGCTAATAGATAACGTCAAT
ATTGTTATCCATTCTGCAGCAACTCTTGATTTTCAGGCATCATTAAAACCAACTGTTTTA
ATTAATCTTTTGGGAACTCGACAAATAATGCAGTTATGCTCTCAAATGAAAAGTTTGGTG
GCAATGACACATGTTTCGAGTGCTTATGTTAATTCATTTTTGCTTGAAACTGAAGAAATA
CTGTATCCAGCTCCAGAAGATCCTGAAAAGGTCATTGAGCTTGTTAAAAATAAAACGGAA
AGCGAGTTGGAAACTCTTACTCCTGGTTTGATAAAGTCGCATCCAAATACATATACCTTT
ACGAAGCATTTAGCCGAGCATGAAGTTAATAAATATGCGCAAAAATTTCCTTGCGCAATT
GTTCGACCATCTATGATTACAGCGAGTTGGATGGAACCTAGAAAAGGTTGGACAATTAGT
AAAAATGGTCCACAAGGATTTTTGATGGGATCATCTAAAGGTGTTATTCGTCGTCTTCCC
GTCAATACAAAGCTAATTTACGATTACATCCCTGTTGACACTGTTGTCAATGAAATTTTG
GTTGCTGCTTATCATGTCGCTCAAAAGAAATCTGGAGAAGTTTCGATTTTCCACTGCACT
ACTTCCACCTACAATCCTTTCAAATGGGACAAAGTTGCTGATAAAACTAACGAGCTTTTA
CACATGTATCCACTTAAATCAGCCGTTTGGTATCCGCATTTAAAATTTGTTTCAAGCTTG
ATGCTTTTTAAAATTTCTGCAATTTTTGTTCACTTTTTACCAGCATACATTCTTGATTTC
ATTACACGTTTAT
>g11424.t4 Gene=g11424 Length=372
MASNVAEFYRNKKILLTGATGFIGVAIVEKILRSCPDVDKIYMLIRSKKGKSIQERLQDI
TKNSVFSLLLEERSQDVFNKLIPIEGDVGEENLALSASDRQLLIDNVNIVIHSAATLDFQ
ASLKPTVLINLLGTRQIMQLCSQMKSLVAMTHVSSAYVNSFLLETEEILYPAPEDPEKVI
ELVKNKTESELETLTPGLIKSHPNTYTFTKHLAEHEVNKYAQKFPCAIVRPSMITASWME
PRKGWTISKNGPQGFLMGSSKGVIRRLPVNTKLIYDYIPVDTVVNEILVAAYHVAQKKSG
EVSIFHCTTSTYNPFKWDKVADKTNELLHMYPLKSAVWYPHLKFVSSLMLFKISAIFVHF
LPAYILDFITRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g11424.t4 | CDD | cd05236 | FAR-N_SDR_e | 12 | 332 | 6.1154E-135 |
| 6 | g11424.t4 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 350 | 1.4E-76 |
| 2 | g11424.t4 | PANTHER | PTHR11011:SF27 | FATTY ACYL-COA REDUCTASE CG8306-RELATED | 2 | 371 | 4.3E-187 |
| 3 | g11424.t4 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 371 | 4.3E-187 |
| 1 | g11424.t4 | Pfam | PF07993 | Male sterility protein | 16 | 286 | 2.6E-72 |
| 8 | g11424.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 343 | - |
| 9 | g11424.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 366 | - |
| 7 | g11424.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 367 | 372 | - |
| 5 | g11424.t4 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 296 | 3.85E-31 |
| 4 | g11424.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 366 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
