Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11424 g11424.t6 TSS g11424.t6 16153130 16153130
chr_1 g11424 g11424.t6 isoform g11424.t6 16153158 16155422
chr_1 g11424 g11424.t6 exon g11424.t6.exon1 16153158 16153196
chr_1 g11424 g11424.t6 exon g11424.t6.exon2 16153685 16153809
chr_1 g11424 g11424.t6 cds g11424.t6.CDS1 16153699 16153809
chr_1 g11424 g11424.t6 exon g11424.t6.exon3 16153894 16154479
chr_1 g11424 g11424.t6 cds g11424.t6.CDS2 16153894 16154479
chr_1 g11424 g11424.t6 exon g11424.t6.exon4 16154537 16154963
chr_1 g11424 g11424.t6 cds g11424.t6.CDS3 16154537 16154963
chr_1 g11424 g11424.t6 exon g11424.t6.exon5 16155026 16155422
chr_1 g11424 g11424.t6 cds g11424.t6.CDS4 16155026 16155422
chr_1 g11424 g11424.t6 TTS g11424.t6 16155626 16155626

Sequences

>g11424.t6 Gene=g11424 Length=1574
AGTTTGTTAGATTATTGTTTTTCGTTAATCATTTTTGTGAAAAAAAGGAAACGATGGCTT
CAAATGTTGCAGAATTCTATCGCAATAAGAAAATTTTACTAACTGGTGCAACTGGCTTCA
TTGGCGTGGCCATTGTAGAAAAAATATTGCGATCATGCCCCGATATTTACATGCTGATTC
GCTCAAAGAAGGGCAAATCTATTCAAGAACGTTTACAAGACATTACAAAAAATTCTGTTT
TCTCATTGTTACTTGAAGAACGGTCGCAAGATGTATTTAATAAATTGATTCCTATTGAAG
GAGATGTTGGCGAAGAAAACCTTGCATTATCAGCCAGTGACCGTCAGTTGCTAATAGATA
ACGTCAATATTGTTATCCATTCTGCAGCAACTCTTGATTTTCAGGCATCATTAAAACCAA
CTGTTTTAATTAATCTTTTGGGAACTCGACAAATAATGCAGTTATGCTCTCAAATGAAAA
GTTTGGTGGCAATGACACATGTTTCGAGTGCTTATGTTAATTCATTTTTGCTTGAAACTG
AAGAAATACTGTATCCAGCTCCAGAAGATCCTGAAAAGGTCATTGAGCTTGTTAAAAATA
AAACGGAAAGCGAGTTGGAAACTCTTACTCCTGGTTTGATAAAGTCGCATCCAAATACAT
ATACCTTTACGAAGCATTTAGCCGAGCATGAAGTTAATAAATATGCGCAAAAATTTCCTT
GCGCAATTGTTCGACCATCTATGATTACAGCGAGTTGGATGGAACCTAGAAAAGGTTGGA
CAATTAGTAAAAATGGTCCACAAGGATTTTTGATGGGATCATCTAAAGGTGTTATTCGTC
GTCTTCCCGTCAATACAAAGCTAATTTACGATTACATCCCTGTTGACACTGTTGTCAATG
AAATTTTGGTTGCTGCTTATCATGTCGCTCAAAAGAAATCTGGAGAAGTTTCGATTTTCC
ACTGCACTACTTCCACCTACAATCCTTTCAAATGGGACAAAGTTGCTGATAAAACTAACG
AGCTTTTACACATGTATCCACTTAAATCAGCCGTTTGGTATCCGCATTTAAAATTTGTTT
CAAGCTTGATGCTTTTTAAAATTTCTGCAATTTTTGTTCACTTTTTACCAGCATACATTC
TTGATTTCATTACACGTTTATCTGGAGGCCGACCAATTTTGGTTCGCCTGCATACCAATG
TTTGGGAATCTTTGAAACTTCTTGAGAAATTCATCTTTACTGAATGGAAATTTCATAACA
AAAACACTTTAATGCTACACAAAACTATGTCTCCGACAGATCAGCAAACATTCAACATTG
ATGTCGGCAAGCTCGAATGGGAAGATTATTTCATTAATCTTGCTCAAGGTGTACGTCAGT
ATCTAAATAACGAAACATTAAAAACACTCCCAGCTGCAAAAAAGAAGGATAAAATTTTGT
TGATTTTACACATTTTTTTACAAGTTGGAATTCATTGTGCTATGTGGAAATTATTTTCAT
GCATTTTTGGTGTCTCAATGATGAAATGTATTTTTGCACTTCCAATTTCTTATTTCGTAC
TAAACATATTATAA

>g11424.t6 Gene=g11424 Length=506
MASNVAEFYRNKKILLTGATGFIGVAIVEKILRSCPDIYMLIRSKKGKSIQERLQDITKN
SVFSLLLEERSQDVFNKLIPIEGDVGEENLALSASDRQLLIDNVNIVIHSAATLDFQASL
KPTVLINLLGTRQIMQLCSQMKSLVAMTHVSSAYVNSFLLETEEILYPAPEDPEKVIELV
KNKTESELETLTPGLIKSHPNTYTFTKHLAEHEVNKYAQKFPCAIVRPSMITASWMEPRK
GWTISKNGPQGFLMGSSKGVIRRLPVNTKLIYDYIPVDTVVNEILVAAYHVAQKKSGEVS
IFHCTTSTYNPFKWDKVADKTNELLHMYPLKSAVWYPHLKFVSSLMLFKISAIFVHFLPA
YILDFITRLSGGRPILVRLHTNVWESLKLLEKFIFTEWKFHNKNTLMLHKTMSPTDQQTF
NIDVGKLEWEDYFINLAQGVRQYLNNETLKTLPAAKKKDKILLILHIFLQVGIHCAMWKL
FSCIFGVSMMKCIFALPISYFVLNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g11424.t6 CDD cd05236 FAR-N_SDR_e 12 329 6.44145E-130
18 g11424.t6 CDD cd09071 FAR_C 354 444 4.50641E-33
9 g11424.t6 Gene3D G3DSA:3.40.50.720 - 2 347 3.3E-74
3 g11424.t6 PANTHER PTHR11011:SF27 FATTY ACYL-COA REDUCTASE CG8306-RELATED 2 490 2.9E-239
4 g11424.t6 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 2 490 2.9E-239
1 g11424.t6 Pfam PF07993 Male sterility protein 16 283 4.9E-70
2 g11424.t6 Pfam PF03015 Male sterility protein 356 447 1.4E-29
12 g11424.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 340 -
14 g11424.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 341 363 -
11 g11424.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 364 460 -
15 g11424.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 461 481 -
13 g11424.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 482 486 -
16 g11424.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 487 505 -
10 g11424.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 506 506 -
8 g11424.t6 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 3 293 5.54E-31
6 g11424.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 341 363 -
5 g11424.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 461 478 -
7 g11424.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 483 505 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed