Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11424 g11424.t9 TSS g11424.t9 16153130 16153130
chr_1 g11424 g11424.t9 isoform g11424.t9 16153176 16155422
chr_1 g11424 g11424.t9 exon g11424.t9.exon1 16153176 16153196
chr_1 g11424 g11424.t9 exon g11424.t9.exon2 16153685 16153818
chr_1 g11424 g11424.t9 exon g11424.t9.exon3 16153894 16154479
chr_1 g11424 g11424.t9 exon g11424.t9.exon4 16154541 16154963
chr_1 g11424 g11424.t9 cds g11424.t9.CDS1 16154599 16154963
chr_1 g11424 g11424.t9 exon g11424.t9.exon5 16155026 16155422
chr_1 g11424 g11424.t9 cds g11424.t9.CDS2 16155026 16155422
chr_1 g11424 g11424.t9 TTS g11424.t9 16155626 16155626

Sequences

>g11424.t9 Gene=g11424 Length=1561
TTTTCGTTAATCATTTTTGTGAAAAAAAGGAAACGATGGCTTCAAATGTTGCAGAATTCT
ATCGCAATAAGAAAATTTTACTAACTGGTGCAACTGGCTTCATTGGCGTGGCCATTGTAG
AAAAAATATTGCGATCATGCCCCGATGTGGATAAAATTTACATGCTGATTCGCTCAAAGA
AGGGCAAATCTATTCAAGAACGTTTACAAGACATTACAAAAAATTCTGTTTTCTCATTGT
TACTTGAAGAACGGTCGCAAGATGTATTTAATAAATTGATTCCTATTGAAGGAGATGTTG
GCGAAGAAAACCTTGCATTATCAGCCAGTGACCGTCAGTTGCTAATAGATAACGTCAATA
TTGTTATCCATTCTGCAGCAACTCTTGATTTTCAGGCATCATTAAAACCAACTGTTTTAA
TTAATCTTTTGGGAACTCGACAAATAATGCAGTTATGCTCTCAAATGAAAAGTTTGGTGG
CAATGACACATGTTTCGAGTGCTTATGTTAATTCATTTTTGCTTGAAACTGAAGAAATAC
TGTATCCAGCTCCAGAAGATCCTGAAAAGGTCATTGAGCTTGTTAAAAATAAAACGGAAA
GCGAGTTGGAAACTCTTACTCCTGGTTTGATAAAGTCGCATCCAAATACATATACCTTTA
CGAAGCATTTAGCCGAGCATGAAGTTAATAAATATGCGCAAAAATTTCCTTGCGCAATTG
TTCGACCATCTATGATTACAGTTGGATGGAACCTAGAAAAGGTTGGACAATTAGTAAAAA
TGGTCCACAAGGATTTTTGATGGGATCATCTAAAGGTGTTATTCGTCGTCTTCCCGTCAA
TACAAAGCTAATTTACGATTACATCCCTGTTGACACTGTTGTCAATGAAATTTTGGTTGC
TGCTTATCATGTCGCTCAAAAGAAATCTGGAGAAGTTTCGATTTTCCACTGCACTACTTC
CACCTACAATCCTTTCAAATGGGACAAAGTTGCTGATAAAACTAACGAGCTTTTACACAT
GTATCCACTTAAATCAGCCGTTTGGTATCCGCATTTAAAATTTGTTTCAAGCTTGATGCT
TTTTAAAATTTCTGCAATTTTTGTTCACTTTTTACCAGCATACATTCTTGATTTCATTAC
ACGTTTATCTGGAGGCCGACCAATTTTGGTTCGCCTGCATACCAATGTTTGGGAATCTTT
GAAACTTCTTGAGAAATTCATCTTTACTGAATGGAAATTTCATAACAAAAACACTTTAAT
GCTACACAAAACTATGTCTCCGACAGATCAGCAAACATTCAACATTGATGTCGGCAAGCT
CGAATGGGAAGATTATTTCATTAATCTTGCTCAAGGTGTACGTCAGTATCTAAATAACGA
AACATTAAAAACACTCCCAGCTGCAAAAAAGAAGGATAAAATTTTGTTGATTTTACACAT
TTTTTTACAAGTTGGAATTCATTGTGCTATGTGGAAATTATTTTCATGCATTTTTGGTGT
CTCAATGATGAAATGTATTTTTGCACTTCCAATTTCTTATTTCGTACTAAACATATTATA
A

>g11424.t9 Gene=g11424 Length=253
MGSSKGVIRRLPVNTKLIYDYIPVDTVVNEILVAAYHVAQKKSGEVSIFHCTTSTYNPFK
WDKVADKTNELLHMYPLKSAVWYPHLKFVSSLMLFKISAIFVHFLPAYILDFITRLSGGR
PILVRLHTNVWESLKLLEKFIFTEWKFHNKNTLMLHKTMSPTDQQTFNIDVGKLEWEDYF
INLAQGVRQYLNNETLKTLPAAKKKDKILLILHIFLQVGIHCAMWKLFSCIFGVSMMKCI
FALPISYFVLNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11424.t9 CDD cd09071 FAR_C 101 191 6.12046E-33
6 g11424.t9 Gene3D G3DSA:3.40.50.720 - 2 94 4.3E-8
2 g11424.t9 PANTHER PTHR11011:SF27 FATTY ACYL-COA REDUCTASE CG8306-RELATED 1 237 7.1E-107
3 g11424.t9 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 1 237 7.1E-107
1 g11424.t9 Pfam PF03015 Male sterility protein 103 194 3.8E-30
9 g11424.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 87 -
13 g11424.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 88 110 -
8 g11424.t9 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 111 207 -
12 g11424.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 208 228 -
10 g11424.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 229 233 -
11 g11424.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 234 252 -
7 g11424.t9 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 253 253 -
5 g11424.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 88 110 -
4 g11424.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 228 250 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed