General information for g11425.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11425 is located on chr_1: 16158319..16159180 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11425 | g11425.t9 | TTS | g11425.t9 | 16155617 | 16155617 |
| chr_1 | g11425 | g11425.t9 | isoform | g11425.t9 | 16155734 | 16156950 |
| chr_1 | g11425 | g11425.t9 | exon | g11425.t9.exon1 | 16155734 | 16156159 |
| chr_1 | g11425 | g11425.t9 | cds | g11425.t9.CDS1 | 16155905 | 16156159 |
| chr_1 | g11425 | g11425.t9 | exon | g11425.t9.exon2 | 16156215 | 16156319 |
| chr_1 | g11425 | g11425.t9 | cds | g11425.t9.CDS2 | 16156215 | 16156319 |
| chr_1 | g11425 | g11425.t9 | exon | g11425.t9.exon3 | 16156386 | 16156950 |
| chr_1 | g11425 | g11425.t9 | cds | g11425.t9.CDS3 | 16156386 | 16156562 |
| chr_1 | g11425 | g11425.t9 | TSS | g11425.t9 | NA | NA |
Sequences
>g11425.t9 Gene=g11425 Length=1096
AGAAATTAAGGCTAAAGAGGAGCAACAGCAACAGGCAAAGGCATCAGAAGAATTGTTACA
AGATAAGGCTCCTATTATTCAATCCGATACAATAGTTAAACCTGATCAAATAACTGTTAG
TTCTCAAGAACCTAAAGAGAGAGTATTACCAAAAATAGAAAAAGAATTGACTTCAGAAGA
CTTGAAAATACTCACGGATGCTTTAAATGAAATCAGTAGTGAGAAAAAATTATTATTGGC
AAAAGAAGAAATTAAGGAAATTAAAGAAGAAATCGCAGAATATGAGGAGGATGTCGAAGA
GCTCAATAAAATTGTTGAACAAAAGCTTGAAAAGATACAACTGAAAGAATCACGTGCAGC
TAAATTGCTTCTCAAAAAAGTCAATTCTATGATTAGTAATTTAGATAAAGCTCTTGAAGA
TTTAGAGACAAAAGAGAAACAAATTAAAACATTAAATACTGAACCAAGTAAAGCAACTGA
AGCTGTTGATGCAGTTATTGCAGAAGAAGCAAAGCGTACAGAAGAACTTGTTCGTATTGA
TGAGATGATGAATGCCATTAGAAAGATACAAAAAGTTTCTGATGAGTCTGTACTGGAGCA
AATTGAAAAGTTGTTGTCAAGAATCGATGATGATCGTGATGGTTCACTGAAAGTAGAAGA
TGTTTTAAAGATTATTGAAACTATTGGAAAGGAGAATATCAATTTAAATGAGAAGCAAAT
TAACGAAATAATTGACTTGATTGATAAAGAGGAAATAATTGAAACCGAAGAAATGATTGA
AAAAGCATTAAAAAAAGAACAAGAACAGCGTAATGTATTGAAGAAAGCAAATGAAGATGA
TTTCACAACTAGTGAAGTTAATTTTATTTTGCAAGACAAAGCAACAGAAATCCAAGAACC
ATCATCAACAGAAAAGGTATTATGAAGAAAAATATAAAAAGACTATTAATTAAAAATTGC
AATTTTTTAGGAAGAAGTTGATGAGAAAATTGTAAAAGCAAATAATCAGACGGTCAATGG
TGTTGTTGATTCAACAACTACTCTTCCAAAGAAATCTGTTGAGAGTCCACAGGACACAAA
AAACAAAAGTGTGTGA
>g11425.t9 Gene=g11425 Length=178
MISNLDKALEDLETKEKQIKTLNTEPSKATEAVDAVIAEEAKRTEELVRIDEMMNAIRKI
QKVSDESVLEQIEKLLSRIDDDRDGSLKVEDVLKIIETIGKENINLNEKQINEIIDLIDK
EEIIETEEMIEKALKKEQEQRNVLKKANEDDFTTSEVNFILQDKATEIQEPSSTEKVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11425.t9 | Coils | Coil | Coil | 2 | 25 | - |
| 3 | g11425.t9 | Coils | Coil | Coil | 120 | 150 | - |
| 2 | g11425.t9 | Gene3D | G3DSA:1.10.238.10 | - | 2 | 163 | 3.8E-7 |
| 5 | g11425.t9 | ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 67 | 102 | 9.827 |
| 1 | g11425.t9 | SUPERFAMILY | SSF47473 | EF-hand | 36 | 138 | 1.9E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
