General information for g11427.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as FAS-associated factor 1.
Parent gene
- The parent gene g11427 is located on chr_1: 16164432..16165898 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11427 | g11427.t11 | TTS | g11427.t11 | 16163284 | 16163284 |
| chr_1 | g11427 | g11427.t11 | isoform | g11427.t11 | 16163394 | 16165898 |
| chr_1 | g11427 | g11427.t11 | exon | g11427.t11.exon1 | 16163394 | 16164150 |
| chr_1 | g11427 | g11427.t11 | cds | g11427.t11.CDS1 | 16163601 | 16164150 |
| chr_1 | g11427 | g11427.t11 | exon | g11427.t11.exon2 | 16164207 | 16164361 |
| chr_1 | g11427 | g11427.t11 | cds | g11427.t11.CDS2 | 16164207 | 16164361 |
| chr_1 | g11427 | g11427.t11 | exon | g11427.t11.exon3 | 16164426 | 16164571 |
| chr_1 | g11427 | g11427.t11 | cds | g11427.t11.CDS3 | 16164426 | 16164571 |
| chr_1 | g11427 | g11427.t11 | exon | g11427.t11.exon4 | 16164634 | 16165065 |
| chr_1 | g11427 | g11427.t11 | cds | g11427.t11.CDS4 | 16164634 | 16165065 |
| chr_1 | g11427 | g11427.t11 | exon | g11427.t11.exon5 | 16165116 | 16165295 |
| chr_1 | g11427 | g11427.t11 | cds | g11427.t11.CDS5 | 16165116 | 16165295 |
| chr_1 | g11427 | g11427.t11 | exon | g11427.t11.exon6 | 16165362 | 16165454 |
| chr_1 | g11427 | g11427.t11 | cds | g11427.t11.CDS6 | 16165362 | 16165454 |
| chr_1 | g11427 | g11427.t11 | exon | g11427.t11.exon7 | 16165544 | 16165898 |
| chr_1 | g11427 | g11427.t11 | cds | g11427.t11.CDS7 | 16165544 | 16165610 |
| chr_1 | g11427 | g11427.t11 | TSS | g11427.t11 | 16166022 | 16166022 |
Sequences
>g11427.t11 Gene=g11427 Length=2118
ATGGAGGAAGTTTTAAATAAAGAGGAAATTCTTGCAAACTTTCAGGTTTATTAGAATCTT
TCTTGTGCATTAATTTTTCATTTCAAAAATCACATTACTTTTTTAGCAAATCACTGCAAT
TGAGGATATTGGAATAGCTCTAAGTCATTTAGAGTCAACAGGATGGGATTTAGAGGTATA
GAAAACTCGTGAATTTTCTAGAAATATGATTCATAAAAAAATTTTTTTAATCATTTTTTT
TTTCATTAAAAATCCTCCATTTAGACTGCAGTGAGGATTGCTATACTGATGGATGGAAAT
GAAAATGAAAGTATTTCTATTGTGGATAATGATCAAAGTGTTATAGAAGTAGCAGGTCCT
TCAACTTCTACGCAGTCAGAATTGACATTCAACATTCGCTTTAAAAAGGATTTGATTACA
ATAAAACTTTCTGAGTTACAGACTGTAGGAGAATTGAAGCAGCTAATAATGAAGAAAACA
TCTGTTCCCGTGTGTCGACAAAATCTGAAAATGAATAATATACCTATTAGAAGTATGCAG
TCTGATTCAACCAAATTAAAAGCTCTTAATTTCAACTCAAATGACATCAATTTAGAATTA
ACCGATATAAGTAATGATGGTGAATTAGGTATTGCTGCTGATATTATTCCAATTTCACCT
ACATCAAACTCGAATGGAAATTATCAATTAAGAATATATTTAACAAATGAAAATCGATAT
TTGAATTTAAATTTTGCTCCATCAAAAACATTACTTGAAATCAAGAATGATGTGTTTGCA
GTCTTAAAAACCCCAGTTCGATTTCAAGTTTGGGAAGGATGGCCGTCAAATGCAACAAAT
GATTCTAAACTAAGCGATTTAGACATCGATCACATTCATTGTCTTCAATTAACATGTACT
GGTAGCGATAGTGCAAGTGCAAGTAGTAGCTCAATCAGAACAATAGGAGAAACTTTAGAA
ATAGATTCTGATTCTGACTCGATTGAATTTGAGGATGCAACAGCCGATGAAGACATGTTT
ACAGAAGAAGGCGTTCAACCTAACCGATTAAAACATCTAATTGAAGATGGTATTGAAGAC
ACAGTCTTGGGATCTCTACAATTTGTAAGTAATTACAGAGAGCGATATGGTGTTGGTCCA
ACTTTTTTCGAAGGTAGCTTAGAAGATGCTCTTAAAACAGCTTATACAGCAAAATCGGCC
AAGGATCGAAAATTACTTGCAATTTATTTGCATCATGATAATAGCGTACTATCAAATGTA
TTTTGTGGACAGTTGTTGGGAAACGAAAATATCATAAAATTATTGAATGAAAATTACATT
TTATTTGGCTGGGATCTTACATTCGAATCAAATAAAAATTTATTTTTATCGTCTTTAACT
GCTTCAGCTACAGACTCGGCGTCTCTTCAAATTCGTAATATGGCTATTAATCAATTTCCA
ATTATATTAATAATCCGAAAATTTAGAGGGATGTGTGAAATAGCTGATATTATTCACGGA
AATATTAATCGTGATGAACTGTATATTCATTTAATGATGAATTCAGATGCGTTTAACGAA
CAAATGAAAATAGATATTCGTGAAGAAAATGAGCGTGCTGCCAGAGAAAGTTTACTGCTA
GAGCAGCAGCAAGCATATCAAGAAAGTTTGCTAGCTGATAGAGCAAAAGAAGAGGAACGA
TTAAGACTTGAAAAAATGATGGAGAATGAACGTCAAAAACAAGAATCTGAATTAGCTGAT
AAACTAGCAAAAAAAGAAGCTGATAGAAGAGATGCAGAAAATTCATTACCACCTGAGCCT
ACAAATGATTGCACTCAACAAATTACAAAGATTCGTTTTAGAAAACCAACTGGTGATTTT
ATTGAACGAAAATTTACAGTTGACACTCAATTAAAAGTATGTATGAATTGAATCTTTTTT
TAAAAAACTTTTTTAAAGACATCATATCTTTTATTTCAGGTTTTATTAAACTTTTCAAAA
GCTAATGGATTTTCTCCAGAAGACTTTAAAATTATCTCAAGTTTTCCCCGACGTGATCTT
ACAACCATCGATTCAGCAAATACTTTAAAGCAATTAAATTTGTATCCACAAGAAACTCTT
ATATTAGAAGAACGATAA
>g11427.t11 Gene=g11427 Length=540
MDGNENESISIVDNDQSVIEVAGPSTSTQSELTFNIRFKKDLITIKLSELQTVGELKQLI
MKKTSVPVCRQNLKMNNIPIRSMQSDSTKLKALNFNSNDINLELTDISNDGELGIAADII
PISPTSNSNGNYQLRIYLTNENRYLNLNFAPSKTLLEIKNDVFAVLKTPVRFQVWEGWPS
NATNDSKLSDLDIDHIHCLQLTCTGSDSASASSSSIRTIGETLEIDSDSDSIEFEDATAD
EDMFTEEGVQPNRLKHLIEDGIEDTVLGSLQFVSNYRERYGVGPTFFEGSLEDALKTAYT
AKSAKDRKLLAIYLHHDNSVLSNVFCGQLLGNENIIKLLNENYILFGWDLTFESNKNLFL
SSLTASATDSASLQIRNMAINQFPIILIIRKFRGMCEIADIIHGNINRDELYIHLMMNSD
AFNEQMKIDIREENERAARESLLLEQQQAYQESLLADRAKEEERLRLEKMMENERQKQES
ELADKLAKKEADRRDAENSLPPEPTNDCTQQITKIRFRKPTGDFIERKFTVDTQLKVCMN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g11427.t11 | Coils | Coil | Coil | 460 | 499 | - |
| 9 | g11427.t11 | Gene3D | G3DSA:3.10.20.90 | - | 31 | 104 | 9.0E-13 |
| 10 | g11427.t11 | Gene3D | G3DSA:3.10.20.90 | - | 133 | 201 | 3.7E-7 |
| 11 | g11427.t11 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 257 | 430 | 4.6E-45 |
| 7 | g11427.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 511 | - |
| 8 | g11427.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 500 | - |
| 1 | g11427.t11 | PANTHER | PTHR23322:SF56 | FAS-ASSOCIATED FACTOR 1 | 81 | 538 | 7.0E-93 |
| 2 | g11427.t11 | PANTHER | PTHR23322 | FAS-ASSOCIATED PROTEIN | 81 | 538 | 7.0E-93 |
| 6 | g11427.t11 | SMART | SM00594 | 45neu3 | 271 | 416 | 1.8E-41 |
| 5 | g11427.t11 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 24 | 98 | 1.3E-8 |
| 4 | g11427.t11 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 126 | 202 | 4.36E-5 |
| 3 | g11427.t11 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 284 | 397 | 2.91E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed