General information for g11427.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11427 is located on chr_1: 16164432..16165898 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11427 | g11427.t12 | TTS | g11427.t12 | 16163284 | 16163284 |
| chr_1 | g11427 | g11427.t12 | isoform | g11427.t12 | 16164145 | 16165281 |
| chr_1 | g11427 | g11427.t12 | exon | g11427.t12.exon1 | 16164145 | 16164150 |
| chr_1 | g11427 | g11427.t12 | exon | g11427.t12.exon2 | 16164207 | 16164361 |
| chr_1 | g11427 | g11427.t12 | exon | g11427.t12.exon3 | 16164426 | 16165065 |
| chr_1 | g11427 | g11427.t12 | cds | g11427.t12.CDS1 | 16164605 | 16165065 |
| chr_1 | g11427 | g11427.t12 | exon | g11427.t12.exon4 | 16165116 | 16165281 |
| chr_1 | g11427 | g11427.t12 | cds | g11427.t12.CDS2 | 16165116 | 16165275 |
| chr_1 | g11427 | g11427.t12 | TSS | g11427.t12 | 16166022 | 16166022 |
Sequences
>g11427.t12 Gene=g11427 Length=967
CTAATAATGAAGAAAACATCTGTTCCCGTGTGTCGACAAAATCTGAAAATGAATAATATA
CCTATTAGAAGTATGCAGTCTGATTCAACCAAATTAAAAGCTCTTAATTTCAACTCAAAT
GACATCAATTTAGAATTAACCGATATAAGTAATGATGGTGAATTAGGTATTGCTGCTGAT
ATTATTCCAATTTCACCTACATCAAACTCGAATGGAAATTATCAATTAAGAATATATTTA
ACAAATGAAAATCGATATTTGAATTTAAATTTTGCTCCATCAAAAACATTACTTGAAATC
AAGAATGATGTGTTTGCAGTCTTAAAAACCCCAGTTCGATTTCAAGTTTGGGAAGGATGG
CCGTCAAATGCAACAAATGATTCTAAACTAAGCGATTTAGACATCGATCACATTCATTGT
CTTCAATTAACATGTACTGGTAGCGATAGTGCAAGTGCAAGTAGTAGCTCAATCAGAACA
ATAGGAGAAACTTTAGAAATAGATTCTGATTCTGACTCGATTGAATTTGAGGATGCAACA
GCCGATGAAGACATGTTTACAGAAGAAGGCGTTCAACCTAACCGATTAAAACATCTAAGT
AAAATTTTAAACTTAAATTATTTTTAAATGGTTAATAATATGATTTTTATCTATTTTTAG
TTGAAGATGGTATTGAAGACACAGTCTTGGGATCTCTACAATTTGTAAGTAATTACAGAG
AGCGATATGGTGTTGGTCCAACTTTTTTCGAAGGTAGCTTAGAAGATGCTCTTAAAACAG
CTTATACAGCAAAATCGGCCAAGGATCGAAAATTACTTGCAATTTATTTGCATCATGATA
ATAGCGTACTATCAAATGTATTTTGTGGACAGTTGTTGGGAAACGAAAATATCATAAAAT
TATTGAATGAAAATTACATTTTATTTGGCTGGGATCTTACATTCGAATCAAATAAAAATT
TATTTTT
>g11427.t12 Gene=g11427 Length=206
MKKTSVPVCRQNLKMNNIPIRSMQSDSTKLKALNFNSNDINLELTDISNDGELGIAADII
PISPTSNSNGNYQLRIYLTNENRYLNLNFAPSKTLLEIKNDVFAVLKTPVRFQVWEGWPS
NATNDSKLSDLDIDHIHCLQLTCTGSDSASASSSSIRTIGETLEIDSDSDSIEFEDATAD
EDMFTEEGVQPNRLKHLSKILNLNYF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11427.t12 | Gene3D | G3DSA:3.10.20.90 | - | 73 | 141 | 1.0e-07 |
| 1 | g11427.t12 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 65 | 142 | 9.4e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
