Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative FAS-associated factor 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11427 g11427.t5 TTS g11427.t5 16163284 16163284
chr_1 g11427 g11427.t5 isoform g11427.t5 16163394 16164571
chr_1 g11427 g11427.t5 exon g11427.t5.exon1 16163394 16163526
chr_1 g11427 g11427.t5 cds g11427.t5.CDS1 16163503 16163526
chr_1 g11427 g11427.t5 exon g11427.t5.exon2 16163616 16164150
chr_1 g11427 g11427.t5 cds g11427.t5.CDS2 16163616 16164092
chr_1 g11427 g11427.t5 exon g11427.t5.exon3 16164207 16164361
chr_1 g11427 g11427.t5 exon g11427.t5.exon4 16164426 16164571
chr_1 g11427 g11427.t5 TSS g11427.t5 NA NA

Sequences

>g11427.t5 Gene=g11427 Length=969
TTGAAGATGGTATTGAAGACACAGTCTTGGGATCTCTACAATTTGTAAGTAATTACAGAG
AGCGATATGGTGTTGGTCCAACTTTTTTCGAAGGTAGCTTAGAAGATGCTCTTAAAACAG
CTTATACAGCAAAATCGGCCAAGGATCGAAAATTACTTGCAATTTATTTGCATCATGATA
ATAGCGTACTATCAAATGTATTTTGTGGACAGTTGTTGGGAAACGAAAATATCATAAAAT
TATTGAATGAAAATTACATTTTATTTGGCTGGGATCTTACATTCGAATCAAATAAAAATT
TATTTTTATCGTCTTTAACTGCTTCAGCTACAGACTCGGCGTCTCTTCAAATTCGTAATA
TGGCTATTAATCAATTTCCAATTATATTAATAATCCGAAAATTTAGAGGGATGTGTGAAA
TAGCTGATATTATTCACGGAAATATTAATCGTGATGAACTGTATATTCATTTAATGATGA
ATTCAGATGCGTTTAACGAACAAATGAAAATAGATATTCGTGAAGAAAATGAGCGTGCTG
CCAGAGAAAGTTTACTGCTAGAGCAGCAGCAAGCATATCAAGAAAGTTTGCTAGCTGATA
GAGCAAAAGAAGAGGAACGATTAAGACTTGAAAAAATGATGGAGAATGAACGTCAAAAAC
AAGAATCTGAATTAGCTGATAAACTAGCAAAAAAAGAAGCTGATAGAAGAGATGCAGAAA
ATTCATTACCACCTGAGCCTACAAATGATTGCACTCAACAAATTACAAAGATTCGTTTTA
GAAAACCAACTGGTGATTTTATTGAACGAAAATTTACAGTTGACACTCAATTAAAATGGA
TTTTCTCCAGAAGACTTTAAAATTATCTCAAGTTTTCCCCGACGTGATCTTACAACCATC
GATTCAGCAAATACTTTAAAGCAATTAAATTTGTATCCACAAGAAACTCTTATATTAGAA
GAACGATAA

>g11427.t5 Gene=g11427 Length=166
MAINQFPIILIIRKFRGMCEIADIIHGNINRDELYIHLMMNSDAFNEQMKIDIREENERA
ARESLLLEQQQAYQESLLADRAKEEERLRLEKMMENERQKQESELADKLAKKEADRRDAE
NSLPPEPTNDCTQQITKIRFRKPTGDFIERKFTVDTQLKWIFSRRL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g11427.t5 Coils Coil Coil 83 122 -
4 g11427.t5 MobiDBLite mobidb-lite consensus disorder prediction 91 123 -
5 g11427.t5 MobiDBLite mobidb-lite consensus disorder prediction 91 134 -
1 g11427.t5 PANTHER PTHR23322:SF56 FAS-ASSOCIATED FACTOR 1 3 161 7.1E-32
2 g11427.t5 PANTHER PTHR23322 FAS-ASSOCIATED PROTEIN 3 161 7.1E-32
3 g11427.t5 SUPERFAMILY SSF54236 Ubiquitin-like 98 162 2.45E-5

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values