General information for g11427.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative FAS-associated factor 1.
Parent gene
- The parent gene g11427 is located on chr_1: 16164432..16165898 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11427 | g11427.t9 | TTS | g11427.t9 | 16163284 | 16163284 |
| chr_1 | g11427 | g11427.t9 | isoform | g11427.t9 | 16163394 | 16165898 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon1 | 16163394 | 16163552 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon2 | 16163616 | 16164150 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon3 | 16164207 | 16164361 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon4 | 16164426 | 16165065 |
| chr_1 | g11427 | g11427.t9 | cds | g11427.t9.CDS1 | 16164605 | 16165065 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon5 | 16165125 | 16165295 |
| chr_1 | g11427 | g11427.t9 | cds | g11427.t9.CDS2 | 16165125 | 16165295 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon6 | 16165362 | 16165454 |
| chr_1 | g11427 | g11427.t9 | cds | g11427.t9.CDS3 | 16165362 | 16165454 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon7 | 16165544 | 16165634 |
| chr_1 | g11427 | g11427.t9 | cds | g11427.t9.CDS4 | 16165544 | 16165634 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon8 | 16165724 | 16165792 |
| chr_1 | g11427 | g11427.t9 | cds | g11427.t9.CDS5 | 16165724 | 16165792 |
| chr_1 | g11427 | g11427.t9 | exon | g11427.t9.exon9 | 16165854 | 16165898 |
| chr_1 | g11427 | g11427.t9 | cds | g11427.t9.CDS6 | 16165854 | 16165898 |
| chr_1 | g11427 | g11427.t9 | TSS | g11427.t9 | 16166022 | 16166022 |
Sequences
>g11427.t9 Gene=g11427 Length=1958
ATGGAGGAAGTTTTAAATAAAGAGGAAATTCTTGCAAACTTTCAGCAAATCACTGCAATT
GAGGATATTGGAATAGCTCTAAGTCATTTAGAGTCAACAGGATGGGATTTAGAGACTGCA
GTGAGGATTGCTATACTGATGGATGGAAATGAAAATGAAAGTATTTCTATTGTGGATAAT
GATCAAAGTGTTATAGAAGTAGCAGGTCCTTCAACTTCTACGCAGTCAGAATTGACATTC
AACATTCGCTTTAAAAAGGATTTGATTACAATAAAACTTTCTGAGTTACAGACTGTAGGA
GAATTGAAGCAGCTAATAATGAAGAAAACATCTGTTCCCGTGTGTCGACAAAATCTGAAA
ATGAATAATATACCTATTAGAAGTATGCAGTCTGATTCAACCAAATTAAAAGCTCTTAAT
TTCAACTCAAATGACATCAATTTAGAATTAACCGATATAAGTAATGATGGTATTGCTGCT
GATATTATTCCAATTTCACCTACATCAAACTCGAATGGAAATTATCAATTAAGAATATAT
TTAACAAATGAAAATCGATATTTGAATTTAAATTTTGCTCCATCAAAAACATTACTTGAA
ATCAAGAATGATGTGTTTGCAGTCTTAAAAACCCCAGTTCGATTTCAAGTTTGGGAAGGA
TGGCCGTCAAATGCAACAAATGATTCTAAACTAAGCGATTTAGACATCGATCACATTCAT
TGTCTTCAATTAACATGTACTGGTAGCGATAGTGCAAGTGCAAGTAGTAGCTCAATCAGA
ACAATAGGAGAAACTTTAGAAATAGATTCTGATTCTGACTCGATTGAATTTGAGGATGCA
ACAGCCGATGAAGACATGTTTACAGAAGAAGGCGTTCAACCTAACCGATTAAAACATCTA
AGTAAAATTTTAAACTTAAATTATTTTTAAATGGTTAATAATATGATTTTTATCTATTTT
TAGTTGAAGATGGTATTGAAGACACAGTCTTGGGATCTCTACAATTTGTAAGTAATTACA
GAGAGCGATATGGTGTTGGTCCAACTTTTTTCGAAGGTAGCTTAGAAGATGCTCTTAAAA
CAGCTTATACAGCAAAATCGGCCAAGGATCGAAAATTACTTGCAATTTATTTGCATCATG
ATAATAGCGTACTATCAAATGTATTTTGTGGACAGTTGTTGGGAAACGAAAATATCATAA
AATTATTGAATGAAAATTACATTTTATTTGGCTGGGATCTTACATTCGAATCAAATAAAA
ATTTATTTTTATCGTCTTTAACTGCTTCAGCTACAGACTCGGCGTCTCTTCAAATTCGTA
ATATGGCTATTAATCAATTTCCAATTATATTAATAATCCGAAAATTTAGAGGGATGTGTG
AAATAGCTGATATTATTCACGGAAATATTAATCGTGATGAACTGTATATTCATTTAATGA
TGAATTCAGATGCGTTTAACGAACAAATGAAAATAGATATTCGTGAAGAAAATGAGCGTG
CTGCCAGAGAAAGTTTACTGCTAGAGCAGCAGCAAGCATATCAAGAAAGTTTGCTAGCTG
ATAGAGCAAAAGAAGAGGAACGATTAAGACTTGAAAAAATGATGGAGAATGAACGTCAAA
AACAAGAATCTGAATTAGCTGATAAACTAGCAAAAAAAGAAGCTGATAGAAGAGATGCAG
AAAATTCATTACCACCTGAGCCTACAAATGATTGCACTCAACAAATTACAAAGATTCGTT
TTAGAAAACCAACTGGTGATTTTATTGAACGAAAATTTACAGTTGACACTCAATTAAAAG
TTTTATTAAACTTTTCAAAAGCTAATGGATTTTCTCCAGAAGACTTTAAAATTATCTCAA
GTTTTCCCCGACGTGATCTTACAACCATCGATTCAGCAAATACTTTAAAGCAATTAAATT
TGTATCCACAAGAAACTCTTATATTAGAAGAACGATAA
>g11427.t9 Gene=g11427 Length=309
MEEVLNKEEILANFQQITAIEDIGIALSHLESTGWDLETAVRIAILMDGNENESISIVDN
DQSVIEVAGPSTSTQSELTFNIRFKKDLITIKLSELQTVGELKQLIMKKTSVPVCRQNLK
MNNIPIRSMQSDSTKLKALNFNSNDINLELTDISNDGIAADIIPISPTSNSNGNYQLRIY
LTNENRYLNLNFAPSKTLLEIKNDVFAVLKTPVRFQVWEGWPSNATNDSKLSDLDIDHIH
CLQLTCTGSDSASASSSSIRTIGETLEIDSDSDSIEFEDATADEDMFTEEGVQPNRLKHL
SKILNLNYF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11427.t9 | Gene3D | G3DSA:1.10.8.10 | DNA helicase RuvA subunit | 4 | 45 | 0.0e+00 |
| 6 | g11427.t9 | Gene3D | G3DSA:3.10.20.90 | - | 77 | 150 | 0.0e+00 |
| 7 | g11427.t9 | Gene3D | G3DSA:3.10.20.90 | - | 176 | 244 | 2.0e-07 |
| 2 | g11427.t9 | PANTHER | PTHR23322:SF56 | FAS-ASSOCIATED FACTOR 1 | 7 | 295 | 0.0e+00 |
| 3 | g11427.t9 | PANTHER | PTHR23322 | FAS-ASSOCIATED PROTEIN | 7 | 295 | 0.0e+00 |
| 1 | g11427.t9 | Pfam | PF14555 | UBA-like domain | 8 | 41 | 3.0e-07 |
| 5 | g11427.t9 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 70 | 144 | 0.0e+00 |
| 4 | g11427.t9 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 168 | 245 | 1.7e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
