General information for g11437.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc finger protein rotund.
Parent gene
- The parent gene g11437 is located on chr_1: 16222152..16223866 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11437 | g11437.t1 | isoform | g11437.t1 | 16222152 | 16223866 |
| chr_1 | g11437 | g11437.t1 | exon | g11437.t1.exon1 | 16222152 | 16223008 |
| chr_1 | g11437 | g11437.t1 | cds | g11437.t1.CDS1 | 16222152 | 16223008 |
| chr_1 | g11437 | g11437.t1 | exon | g11437.t1.exon2 | 16223078 | 16223291 |
| chr_1 | g11437 | g11437.t1 | cds | g11437.t1.CDS2 | 16223078 | 16223291 |
| chr_1 | g11437 | g11437.t1 | exon | g11437.t1.exon3 | 16223852 | 16223866 |
| chr_1 | g11437 | g11437.t1 | cds | g11437.t1.CDS3 | 16223852 | 16223866 |
| chr_1 | g11437 | g11437.t1 | TSS | g11437.t1 | NA | NA |
| chr_1 | g11437 | g11437.t1 | TTS | g11437.t1 | NA | NA |
Sequences
>g11437.t1 Gene=g11437 Length=1086
ATGAATGACATAAAATTAATAAGCAATAAATTAGAATATCAGTCACAAACTAACATGAAG
GAAGGCAAGCCATACAAATGCACTCAATGTACAAAGGCATTCGCTAATTCGAGCTATCTC
TCACAGCATACGAGGATTCATCTTGGAATTAAACCATACCTTTGTGAAATTTGTCAACGA
AAATTTACTCAGCTTTCACATCTACAGCAGCATATTCGAACACATACAGGAGATAAACCT
TATAAATGCCGACACACTGGTTGTATTAAGCAATTTTCGCAACTTTCTAATCTTCAATCA
CATTCTCGATGTCATCAAACCGATCGACCATTCAAATGCAATTCGTGCTATAAATGTTTC
AACGATGAGACTGCGCTCCTTCAGCATATTCCAAAGCACAAAGAATCGAAGCATTTAAAA
ACACACATTTGCCAATATTGTGGAAAGTCTTATACACAAGAAACCTACCTGCAGAAACAT
CTTCAGAAACACATTGAGCGCAATGACAAACGAATGACAACAACTGCCATTGCTTTTCGT
AATTCAAATACAACAACGAATGTTGAACAGCCGTTTTGGAATAGTAAAGAATCAATAGCA
ATCATATCTGATCCTATTCAACAATCACAGCAACAACAACAACAGCATCATCATCAGTCT
CATCAGACAACGCACTATGAGTTTGTAATAAACAGTCAACAGAACCAATCCCGTACAACA
ACACATGAAATTAAAGACATTTCAAGCCCGCAAATGAATCATCATATACCAATCACATCA
TCATCATCCTCTGATGAACTTCTACTCAATACAACGAACTCAAACGCAAAATTAAACAAC
AATTCCGCTTTTACACCGATTAATATTATAAATCCATTAAGTTCTTTACAGCATCAACAA
ATTTCACAACGTCCAATTTACTATGATGCAATTGCACTTCAAAATAGAAGCGTCAGTCAA
GGCACAATGAATTGTTTTCCTAATCAACTCATATCTCTTCATCAAATACGAAACTTTCAA
CCGAGTGATCATCTTATAAGTATTAGTAGCTCAACGGCACAACAAATTAAAGAAAAAGGA
CAATAA
>g11437.t1 Gene=g11437 Length=361
MNDIKLISNKLEYQSQTNMKEGKPYKCTQCTKAFANSSYLSQHTRIHLGIKPYLCEICQR
KFTQLSHLQQHIRTHTGDKPYKCRHTGCIKQFSQLSNLQSHSRCHQTDRPFKCNSCYKCF
NDETALLQHIPKHKESKHLKTHICQYCGKSYTQETYLQKHLQKHIERNDKRMTTTAIAFR
NSNTTTNVEQPFWNSKESIAIISDPIQQSQQQQQQHHHQSHQTTHYEFVINSQQNQSRTT
THEIKDISSPQMNHHIPITSSSSSDELLLNTTNSNAKLNNNSAFTPINIINPLSSLQHQQ
ISQRPIYYDAIALQNRSVSQGTMNCFPNQLISLHQIRNFQPSDHLISISSSTAQQIKEKG
Q
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g11437.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 23 | 51 | 1.4E-13 |
| 19 | g11437.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 52 | 77 | 1.7E-13 |
| 20 | g11437.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 78 | 104 | 8.8E-11 |
| 21 | g11437.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 105 | 180 | 6.2E-12 |
| 4 | g11437.t1 | PANTHER | PTHR24393 | ZINC FINGER PROTEIN | 13 | 175 | 1.5E-94 |
| 5 | g11437.t1 | PANTHER | PTHR24393:SF97 | TRANSCRIPTION FACTOR | 13 | 175 | 1.5E-94 |
| 3 | g11437.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 25 | 47 | 1.2E-4 |
| 2 | g11437.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 53 | 75 | 2.9E-5 |
| 1 | g11437.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 142 | 164 | 2.7E-4 |
| 16 | g11437.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 27 | 47 | - |
| 14 | g11437.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 55 | 75 | - |
| 18 | g11437.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 83 | 105 | - |
| 15 | g11437.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 113 | 133 | - |
| 17 | g11437.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 144 | 164 | - |
| 25 | g11437.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 25 | 52 | 15.313 |
| 26 | g11437.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 53 | 80 | 15.978 |
| 27 | g11437.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 81 | 110 | 12.965 |
| 24 | g11437.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 111 | 138 | 10.783 |
| 23 | g11437.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 142 | 169 | 10.907 |
| 13 | g11437.t1 | SMART | SM00355 | c2h2final6 | 25 | 47 | 0.0032 |
| 12 | g11437.t1 | SMART | SM00355 | c2h2final6 | 53 | 75 | 0.0024 |
| 11 | g11437.t1 | SMART | SM00355 | c2h2final6 | 81 | 105 | 0.075 |
| 9 | g11437.t1 | SMART | SM00355 | c2h2final6 | 111 | 133 | 0.76 |
| 10 | g11437.t1 | SMART | SM00355 | c2h2final6 | 142 | 164 | 0.0032 |
| 6 | g11437.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 23 | 75 | 5.45E-17 |
| 7 | g11437.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 62 | 120 | 3.38E-16 |
| 8 | g11437.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 109 | 164 | 2.0E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed