General information for g11438.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc finger protein rotund.
Parent gene
- The parent gene g11438 is located on chr_1: 16248497..16251899 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11438 | g11438.t1 | isoform | g11438.t1 | 16245099 | 16248497 |
| chr_1 | g11438 | g11438.t1 | exon | g11438.t1.exon1 | 16245099 | 16245254 |
| chr_1 | g11438 | g11438.t1 | cds | g11438.t1.CDS1 | 16245099 | 16245254 |
| chr_1 | g11438 | g11438.t1 | exon | g11438.t1.exon2 | 16245350 | 16245436 |
| chr_1 | g11438 | g11438.t1 | cds | g11438.t1.CDS2 | 16245350 | 16245436 |
| chr_1 | g11438 | g11438.t1 | exon | g11438.t1.exon3 | 16246865 | 16246910 |
| chr_1 | g11438 | g11438.t1 | cds | g11438.t1.CDS3 | 16246865 | 16246910 |
| chr_1 | g11438 | g11438.t1 | exon | g11438.t1.exon4 | 16246971 | 16247191 |
| chr_1 | g11438 | g11438.t1 | cds | g11438.t1.CDS4 | 16246971 | 16247191 |
| chr_1 | g11438 | g11438.t1 | exon | g11438.t1.exon5 | 16247304 | 16247523 |
| chr_1 | g11438 | g11438.t1 | cds | g11438.t1.CDS5 | 16247304 | 16247523 |
| chr_1 | g11438 | g11438.t1 | exon | g11438.t1.exon6 | 16247593 | 16248497 |
| chr_1 | g11438 | g11438.t1 | cds | g11438.t1.CDS6 | 16247593 | 16248497 |
| chr_1 | g11438 | g11438.t1 | TTS | g11438.t1 | 16249025 | 16249025 |
| chr_1 | g11438 | g11438.t1 | TSS | g11438.t1 | NA | NA |
Sequences
>g11438.t1 Gene=g11438 Length=1635
ATGCCAGGCGCTAGTGTGCAACAAAGTCAAAATCCGACACAAGGACTTGTTCATTGGATG
AGTGCAGTAATGGCTGAGCATATGACATCGGGTTCTCATCATGAAACTACAGCTGCTCCA
GTTGGAATGCATTATATGTGGAATGGAACTGTAGAGCAGTGTGCACAGCACACAAAAGAC
ATTGCAGATTATAACAATTGGACGTCACAACGTAATCACATGTCAATGAAGCAAGGCTTT
GAGGCAAAAATGAATGTTACTGATCAATATCATACAAATATTCAAAAAGGACATATATTA
GACGATATTCGTATCGATCAAAGTGGACAAGTAGCACCTATGTACGCAGCTAGTTCTTTG
CGAACAAATCAAAACTCACCAGGAAATTTACATGGTCAATCGACTTCAACTTTGTTAGTA
GTTCCGCAGCCTATAAATGCAACAAAACTTCCATCATCTGGTGCACCGAATGTTAGTGGT
CGAAAATATCAATGCAAGATGTGTCCACAGATTTTTAGCTCAAAAGCTGATTTGCAGCTA
CATACACAGGCTCACATGCGAGAGGCAAAGCCATACAAGTGCACCCAATGTTCAAAATCA
TTCGCTAATTCGAGCTATCTCTCACAGCATACGAGGATTCATCTTGGAATTAAACCATAT
CGATGTGAAATTTGTCAACGAAAATTTACTCAGCTTTCACATCTACAGCAGCATATTCGA
ACACACACAGGAGATAAACCTTATAAATGCCGGCACACTGGTTGTGTAAAAGCTTTCTCG
CAACTTTCTAATCTTCAATCACATTCTCGCAGTCATCAAACCGATAAACCATTCAAGTGT
AATTCGTGCTATAAATGTTTTTCCGATGAACCTGCATTACTGGAGCATATTCCAAAGCAC
AAAGAATCGAAACATTTGAAAACACAAATATGTCAATATTGTGGAAAATCATATACACAA
GAAACTTACTTGCAAAAACACTTGCAGAAGCATGCTGAACGACCAGATAAACGACCACCA
ATTACAGGTGGTAGAAGTCAAGGCACTCAAAATAATAATAATAATAATGTGAACAACAAC
ACCGTATCAAATAATACCGCAAACAATAATAATAACTCAAGTGCAAATTTAGGCAACAAT
ATGGGAATGGTGCCGACAGTGAGTGTGATATCGCAACAAAATCAATCTTACTGGCCAAGT
AAAGTGAGTCCTGATTCTGCTGCAAATATCAATTCAGAAGTAGTGCAACACCAACAAGAA
TTTCACATGTCTAATAATAATGACATGCATCATTCGAGAACAAATGAAAATGAAATGAAT
GAAACAGAGCTTGACGTTACTCCTAATTCTGGAAATTATGATGGACATGAGCAATCGAAA
CTGATATCTAATTCAGCATTCACTCCAATCAACACAATGTCACCTCATTTCAATATTCAA
CATCATCAGCTTCCACAAAGACCATATATCTATGATGCAATCAATATTCAAAATAAAAAT
ATTGTTCACAGTTCAAGTAACAGCTTTCCAAATCAACTAATATCATTACATCAAATTAGA
AATTATCAACCCAGCACATTGATGAATAATGAACATCTAGTTGGCATAAATATCTCAACG
AAAGATAAAGATTAA
>g11438.t1 Gene=g11438 Length=544
MPGASVQQSQNPTQGLVHWMSAVMAEHMTSGSHHETTAAPVGMHYMWNGTVEQCAQHTKD
IADYNNWTSQRNHMSMKQGFEAKMNVTDQYHTNIQKGHILDDIRIDQSGQVAPMYAASSL
RTNQNSPGNLHGQSTSTLLVVPQPINATKLPSSGAPNVSGRKYQCKMCPQIFSSKADLQL
HTQAHMREAKPYKCTQCSKSFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIR
THTGDKPYKCRHTGCVKAFSQLSNLQSHSRSHQTDKPFKCNSCYKCFSDEPALLEHIPKH
KESKHLKTQICQYCGKSYTQETYLQKHLQKHAERPDKRPPITGGRSQGTQNNNNNNVNNN
TVSNNTANNNNNSSANLGNNMGMVPTVSVISQQNQSYWPSKVSPDSAANINSEVVQHQQE
FHMSNNNDMHHSRTNENEMNETELDVTPNSGNYDGHEQSKLISNSAFTPINTMSPHFNIQ
HHQLPQRPYIYDAINIQNKNIVHSSSNSFPNQLISLHQIRNYQPSTLMNNEHLVGINIST
KDKD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g11438.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 161 | 192 | 5.1E-5 |
| 13 | g11438.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 193 | 217 | 1.9E-13 |
| 14 | g11438.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 218 | 243 | 3.0E-13 |
| 12 | g11438.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 244 | 270 | 2.0E-12 |
| 11 | g11438.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 271 | 340 | 1.3E-11 |
| 29 | g11438.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 355 | - |
| 28 | g11438.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 340 | - |
| 6 | g11438.t1 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 2 | 423 | 7.5E-122 |
| 7 | g11438.t1 | PANTHER | PTHR23226:SF160 | SI:CH211-154O6.2 | 2 | 423 | 7.5E-122 |
| 5 | g11438.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 163 | 185 | 0.0029 |
| 4 | g11438.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 192 | 214 | 1.2E-4 |
| 3 | g11438.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 220 | 242 | 7.8E-6 |
| 2 | g11438.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 248 | 272 | 0.0091 |
| 1 | g11438.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 311 | 331 | 2.8E-4 |
| 19 | g11438.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 165 | 185 | - |
| 18 | g11438.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 194 | 214 | - |
| 21 | g11438.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 222 | 242 | - |
| 20 | g11438.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 250 | 272 | - |
| 17 | g11438.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 280 | 300 | - |
| 16 | g11438.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 311 | 331 | - |
| 34 | g11438.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 163 | 190 | 11.094 |
| 33 | g11438.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 192 | 219 | 15.604 |
| 32 | g11438.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 220 | 247 | 16.332 |
| 31 | g11438.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 248 | 277 | 13.775 |
| 30 | g11438.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 278 | 305 | 10.471 |
| 35 | g11438.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 309 | 336 | 10.325 |
| 27 | g11438.t1 | SMART | SM00355 | c2h2final6 | 163 | 185 | 0.0017 |
| 26 | g11438.t1 | SMART | SM00355 | c2h2final6 | 192 | 214 | 0.0012 |
| 25 | g11438.t1 | SMART | SM00355 | c2h2final6 | 220 | 242 | 3.2E-4 |
| 23 | g11438.t1 | SMART | SM00355 | c2h2final6 | 248 | 272 | 0.0059 |
| 24 | g11438.t1 | SMART | SM00355 | c2h2final6 | 278 | 300 | 0.3 |
| 22 | g11438.t1 | SMART | SM00355 | c2h2final6 | 309 | 331 | 0.0072 |
| 9 | g11438.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 161 | 214 | 8.73E-13 |
| 8 | g11438.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 200 | 255 | 7.58E-18 |
| 10 | g11438.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 242 | 296 | 1.83E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K23480 (zinc finger protein 362/384)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed