General information for g11446.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Longitudinals lacking protein, isoform G.
Parent gene
- The parent gene g11446 is located on chr_1: 16308257..16310362 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11446 | g11446.t1 | isoform | g11446.t1 | 16306047 | 16310362 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon1 | 16306047 | 16306112 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS1 | 16306047 | 16306112 |
| chr_1 | g11446 | g11446.t1 | TTS | g11446.t1 | 16306070 | 16306070 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon2 | 16306736 | 16307017 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS2 | 16306736 | 16307017 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon3 | 16307117 | 16307142 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS3 | 16307117 | 16307142 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon4 | 16307229 | 16307396 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS4 | 16307229 | 16307396 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon5 | 16307588 | 16307653 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS5 | 16307588 | 16307653 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon6 | 16307711 | 16307778 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS6 | 16307711 | 16307778 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon7 | 16308229 | 16308257 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS7 | 16308229 | 16308257 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon8 | 16308686 | 16308824 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS8 | 16308686 | 16308824 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon9 | 16308882 | 16308960 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS9 | 16308882 | 16308960 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon10 | 16309014 | 16309367 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS10 | 16309014 | 16309367 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon11 | 16309430 | 16309627 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS11 | 16309430 | 16309627 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon12 | 16309682 | 16309877 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS12 | 16309682 | 16309877 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon13 | 16309934 | 16310074 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS13 | 16309934 | 16310074 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon14 | 16310137 | 16310214 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS14 | 16310137 | 16310214 |
| chr_1 | g11446 | g11446.t1 | exon | g11446.t1.exon15 | 16310300 | 16310362 |
| chr_1 | g11446 | g11446.t1 | cds | g11446.t1.CDS15 | 16310300 | 16310362 |
| chr_1 | g11446 | g11446.t1 | TSS | g11446.t1 | 16310394 | 16310394 |
Sequences
>g11446.t1 Gene=g11446 Length=1953
ATGCAGCAATTTCAAATCAAGTGGAATAATCATTTAAAAATATTTAGTAAAGCACTCTCA
AAGTTTTTTGAAGACAAGAAATTCTTAGATGTGATTTTGGTAGTTGAAAATGGAAATCAT
ATAATTCAATGTCATAAAATGGTATTAGCAGCATGCTCGACCTATTTTGCCAATATTTTC
AAATGTAATCTGCTAGACGATAAAAATCCAGTCATTTGTTTACCCAGTGAGATACAATTA
TGGGAAATTCAAGCTATTCTTAATTACATGTATAATGGAGAGGTATGCATTTCACAAGAC
GGACTAAAGAGTTTAGTAAAATGTGCTGAACTTTTGCAAGTTAAAGGCTTGTGGCGGAAT
GAAAAAATTGATAATGTGAACGTCACATCTACCTCTACTTCAACCTCTACTGTCAACGAG
AACACTAATGAGCTACCAAATTATTCGGATATGATTATTAAAACTGAAATTGATATAGAT
GATATAGAAAATCAGAAGACTGGTTATTACACTCACACATTTGAAAAAGGGAGTGTTGAA
AATACCACCAATAATGAAACAAATGGGGAGTTTTCGAATTCTCAACTTATGAGGAAAGAG
ACTGAAAAAAATTTGGAACGAACAAAGAAGAGCCTTCATAAAAAAGACACTGCTGTGACA
AAAAACAACTCTAATGCTATCAACTGTCAAAAACAATTTGAGAACATTATTTGTTCACCT
ATTCTATATTGGCGTGAGCAGCATGATAAAGAAATTAACGAGAAAAAAGAAATGGTAGAT
AGTCAGCAAGAAAGAAAGCCAGAAGATGAAATTGAAAAAGTGGAGGAAAATGATGACGAT
GAAGAGGAGAATGAATTAGATGAGAATAGCAGTCAACATCAGATATTGTTTTCAAATGAA
ATGATGATAGATAATGATGATGAATGTAATTTGTTAATTGCATCAGTTAGTGGTATGAGT
GAGGAATCACAGCAGTTTTCAGATGATAAAAAATCATCAATTAATGGATTATATTTAAGA
AATCCTCGAGGTAATCAAACTAGACAATACGATGTGAATTCGTTATATCTAGCTCTTGAA
GATGTTAGAAATGGAATCAGTATTTATCGAGCTGCCCAGAGTCACCACGTTCCCCGTAAA
ACATTGAGAAACTGGATGAAGCGATTACATATAAAGTCAAAATTTCCGATGCCAAAACAA
TTAGCCAAAGCTGCTGAGCGAAAAAAATCCGTTCAAATGCATACTACGTCAACTATTTAT
TTTCATGCAACAACTCTAAGTGTTATCATATTGATTCTTTTGTTATCACATCGAGTTTAT
TCGCAAATTGGTCAAACAATCAAAGATTCTATATTAGAATATGACTTGTTAGCTGCAGCA
ATTTCCGATGTAGAAAGCATCAATAGTGGTGGCGTAAGATATATTGAAGAAGTCAATGGA
CCAGCGTATTATGAATTTAGATCAAATGCAAATATAAGAAATCCTTATAAAGTGATTGCA
CCAAATACTCTTAAGGACTTTGTTCTCATTTCAACTATTAAAATTACAAATAAATCTGAT
GGATATTTATTTTCGATTGTCAACAGTTTAGACACAACTGTACAGTTCGGAATAAAAGTA
TCACCAATGCAAAGAAGCTATCTCAACATCACATTAATCTACAATGATCTTCAGAAAGCG
ACAGATTCATCAGTCTCATTCACATTAACACATGATTCAAAAAATTGGATTAATTTCGCT
ATACAGATGATTGATGAACGAGTATCATTGTATCATAATTGTCTAAAAATCGATGAACGA
AATATCTCAAGACAAATGTTGACATTTGAATCGGCATCGATATTTTATCTCGCACAGGCA
GGTTCATATTTGAAAGGAAAGTTTGAGGAAAGTCCGAAAAAATGGTTGTATCCAAAAGTT
TGTTACGGAGAAGAGAAGAAAAAAATGAGATAA
>g11446.t1 Gene=g11446 Length=650
MQQFQIKWNNHLKIFSKALSKFFEDKKFLDVILVVENGNHIIQCHKMVLAACSTYFANIF
KCNLLDDKNPVICLPSEIQLWEIQAILNYMYNGEVCISQDGLKSLVKCAELLQVKGLWRN
EKIDNVNVTSTSTSTSTVNENTNELPNYSDMIIKTEIDIDDIENQKTGYYTHTFEKGSVE
NTTNNETNGEFSNSQLMRKETEKNLERTKKSLHKKDTAVTKNNSNAINCQKQFENIICSP
ILYWREQHDKEINEKKEMVDSQQERKPEDEIEKVEENDDDEEENELDENSSQHQILFSNE
MMIDNDDECNLLIASVSGMSEESQQFSDDKKSSINGLYLRNPRGNQTRQYDVNSLYLALE
DVRNGISIYRAAQSHHVPRKTLRNWMKRLHIKSKFPMPKQLAKAAERKKSVQMHTTSTIY
FHATTLSVIILILLLSHRVYSQIGQTIKDSILEYDLLAAAISDVESINSGGVRYIEEVNG
PAYYEFRSNANIRNPYKVIAPNTLKDFVLISTIKITNKSDGYLFSIVNSLDTTVQFGIKV
SPMQRSYLNITLIYNDLQKATDSSVSFTLTHDSKNWINFAIQMIDERVSLYHNCLKIDER
NISRQMLTFESASIFYLAQAGSYLKGKFEESPKKWLYPKVCYGEEKKKMR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g11446.t1 | CDD | cd18315 | BTB_POZ_BAB-like | 28 | 116 | 2.59788E-23 |
| 9 | g11446.t1 | Coils | Coil | Coil | 245 | 265 | - |
| 8 | g11446.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 120 | 9.6E-26 |
| 7 | g11446.t1 | Gene3D | G3DSA:2.60.120.200 | - | 445 | 632 | 2.3E-24 |
| 17 | g11446.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 293 | - |
| 19 | g11446.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 272 | - |
| 18 | g11446.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 287 | - |
| 3 | g11446.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 2 | 134 | 1.6E-39 |
| 2 | g11446.t1 | Pfam | PF00651 | BTB/POZ domain | 20 | 119 | 6.9E-19 |
| 1 | g11446.t1 | Pfam | PF05225 | helix-turn-helix, Psq domain | 355 | 390 | 1.6E-5 |
| 11 | g11446.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 418 | - |
| 12 | g11446.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 419 | 440 | - |
| 10 | g11446.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 441 | 650 | - |
| 20 | g11446.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 99 | 18.162 |
| 15 | g11446.t1 | SMART | SM00225 | BTB_4 | 29 | 129 | 1.1E-13 |
| 16 | g11446.t1 | SMART | SM00210 | TSPN_2 | 460 | 640 | 0.005 |
| 5 | g11446.t1 | SUPERFAMILY | SSF54695 | POZ domain | 5 | 119 | 6.75E-25 |
| 6 | g11446.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 345 | 400 | 4.12E-10 |
| 4 | g11446.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 481 | 629 | 1.35E-13 |
| 14 | g11446.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 418 | 440 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed