General information for g11446.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Longitudinals lacking protein, isoform G.
Parent gene
- The parent gene g11446 is located on chr_1: 16308257..16310362 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11446 | g11446.t3 | isoform | g11446.t3 | 16308257 | 16310362 |
| chr_1 | g11446 | g11446.t3 | exon | g11446.t3.exon1 | 16308257 | 16309367 |
| chr_1 | g11446 | g11446.t3 | TTS | g11446.t3 | 16308298 | 16308298 |
| chr_1 | g11446 | g11446.t3 | cds | g11446.t3.CDS1 | 16309006 | 16309367 |
| chr_1 | g11446 | g11446.t3 | exon | g11446.t3.exon2 | 16309430 | 16309627 |
| chr_1 | g11446 | g11446.t3 | cds | g11446.t3.CDS2 | 16309430 | 16309627 |
| chr_1 | g11446 | g11446.t3 | exon | g11446.t3.exon3 | 16309682 | 16309877 |
| chr_1 | g11446 | g11446.t3 | cds | g11446.t3.CDS3 | 16309682 | 16309877 |
| chr_1 | g11446 | g11446.t3 | exon | g11446.t3.exon4 | 16309934 | 16310074 |
| chr_1 | g11446 | g11446.t3 | cds | g11446.t3.CDS4 | 16309934 | 16310074 |
| chr_1 | g11446 | g11446.t3 | exon | g11446.t3.exon5 | 16310137 | 16310214 |
| chr_1 | g11446 | g11446.t3 | cds | g11446.t3.CDS5 | 16310137 | 16310214 |
| chr_1 | g11446 | g11446.t3 | exon | g11446.t3.exon6 | 16310300 | 16310362 |
| chr_1 | g11446 | g11446.t3 | cds | g11446.t3.CDS6 | 16310300 | 16310362 |
| chr_1 | g11446 | g11446.t3 | TSS | g11446.t3 | 16310394 | 16310394 |
Sequences
>g11446.t3 Gene=g11446 Length=1787
ATGCAGCAATTTCAAATCAAGTGGAATAATCATTTAAAAATATTTAGTAAAGCACTCTCA
AAGTTTTTTGAAGACAAGAAATTCTTAGATGTGATTTTGGTAGTTGAAAATGGAAATCAT
ATAATTCAATGTCATAAAATGGTATTAGCAGCATGCTCGACCTATTTTGCCAATATTTTC
AAATGTAATCTGCTAGACGATAAAAATCCAGTCATTTGTTTACCCAGTGAGATACAATTA
TGGGAAATTCAAGCTATTCTTAATTACATGTATAATGGAGAGGTATGCATTTCACAAGAC
GGACTAAAGAGTTTAGTAAAATGTGCTGAACTTTTGCAAGTTAAAGGCTTGTGGCGGAAT
GAAAAAATTGATAATGTGAACGTCACATCTACCTCTACTTCAACCTCTACTGTCAACGAG
AACACTAATGAGCTACCAAATTATTCGGATATGATTATTAAAACTGAAATTGATATAGAT
GATATAGAAAATCAGAAGACTGGTTATTACACTCACACATTTGAAAAAGGGAGTGTTGAA
AATACCACCAATAATGAAACAAATGGGGAGTTTTCGAATTCTCAACTTATGAGGAAAGAG
ACTGAAAAAAATTTGGAACGAACAAAGAAGAGCCTTCATAAAAAAGACACTGCTGTGACA
AAAAACAACTCTAATGCTATCAACTGTCAAAAACAATTTGAGAACATTATTTGTTCACCT
ATTCTATATTGGCGTGAGCAGCATGATAAAGAAATTAACGAGAAAAAAGAAATGGTAGAT
AGTCAGCAAGAAAGAAAGCCAGAAGATGAAATTGAAAAAGTGGAGGAAAATGATGACGAT
GAAGAGGAGAATGAATTAGATGAGAATAGCAGTCAACATCAGATATTGTTTTCAAATGAA
ATGATGATAGATAATGATGATGAATGTAATTTGTTAATTGCATCAGTTAGTGGTATGAGT
GAGGAATCACAGCAGTTTTCAGATGATAAAAAATCATCAATTAATGGATTATATTTAAGA
AATCCTCGAGGTAGTTAATAATCATTAATATTGATAACGATTTAAAAATTTGTTTTTTTA
AAGGTAATCAAACTAGACAATACGATGTGAATTCGTTATATCTAGCTCTTGAAGATGTTA
GAAATGGAATCAGTATTTATCGGTGAATCTATTAAAATATTTTTTTGAGTTATTTGGTAC
TATTTATATTTTTTTATAGAGCTGCCCAGAGTCACCACGTTCCCCGTAAAACATTGAGAA
ACTGGATGAAGCGATTACATATAAAGTCAAAATTTCCGATGCCAAAACAATTAGCCAAAG
CTGCTGAGCGAAAAAAATCCGTTCAAATGCATACTACGGTAAAAAGCGAAATGAATTTTC
AAAATTTTAACACTACAACTATTGATGAAAGTATGATAGAGAAATTTTAAAATGCATGAT
TTTTTATGAATGAATTTAAATTTTTATTTTATTGCTTAAGTAAAAGAAAACACATTTTCT
ATCTAGTCAAAAATTTTTCATTGGCGTATCATACAATTTAATTTTTGAATAAAATGAAGA
ATTGTGATTCATCGTCATCTATGATATATTAAATAATTTTTTAAAAAGTTCTCATTTTTT
AAATGTAACAAGTTTTATATTAATTTAATAATATAATTTTTAACTACCTAGTCATTTATC
TTTAAGAAAAGAATCAGTGTGCAAGAGTATTATTAATAAAAACGTATTGATGAAGATTTA
CAACGTAAAAACTTATTTTTACTCTAATTTTATTTTTTCATTGCAGT
>g11446.t3 Gene=g11446 Length=345
MQQFQIKWNNHLKIFSKALSKFFEDKKFLDVILVVENGNHIIQCHKMVLAACSTYFANIF
KCNLLDDKNPVICLPSEIQLWEIQAILNYMYNGEVCISQDGLKSLVKCAELLQVKGLWRN
EKIDNVNVTSTSTSTSTVNENTNELPNYSDMIIKTEIDIDDIENQKTGYYTHTFEKGSVE
NTTNNETNGEFSNSQLMRKETEKNLERTKKSLHKKDTAVTKNNSNAINCQKQFENIICSP
ILYWREQHDKEINEKKEMVDSQQERKPEDEIEKVEENDDDEEENELDENSSQHQILFSNE
MMIDNDDECNLLIASVSGMSEESQQFSDDKKSSINGLYLRNPRGS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11446.t3 | CDD | cd18315 | BTB_POZ_BAB-like | 28 | 116 | 5.8577E-24 |
| 5 | g11446.t3 | Coils | Coil | Coil | 245 | 265 | - |
| 4 | g11446.t3 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 120 | 3.1E-26 |
| 8 | g11446.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 294 | - |
| 10 | g11446.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 272 | - |
| 9 | g11446.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 287 | - |
| 11 | g11446.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 345 | - |
| 12 | g11446.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 334 | - |
| 2 | g11446.t3 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 2 | 135 | 9.9E-40 |
| 1 | g11446.t3 | Pfam | PF00651 | BTB/POZ domain | 20 | 119 | 2.3E-19 |
| 13 | g11446.t3 | ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 99 | 18.162 |
| 7 | g11446.t3 | SMART | SM00225 | BTB_4 | 29 | 129 | 1.1E-13 |
| 3 | g11446.t3 | SUPERFAMILY | SSF54695 | POZ domain | 5 | 119 | 2.2E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
