General information for g11450.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11450 is located on chr_1: 16333819..16335142 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11450 | g11450.t3 | isoform | g11450.t3 | 16327185 | 16331101 |
| chr_1 | g11450 | g11450.t3 | exon | g11450.t3.exon1 | 16327185 | 16327588 |
| chr_1 | g11450 | g11450.t3 | exon | g11450.t3.exon2 | 16330075 | 16331101 |
| chr_1 | g11450 | g11450.t3 | cds | g11450.t3.CDS1 | 16330525 | 16331100 |
| chr_1 | g11450 | g11450.t3 | TSS | g11450.t3 | NA | NA |
| chr_1 | g11450 | g11450.t3 | TTS | g11450.t3 | NA | NA |
Sequences
>g11450.t3 Gene=g11450 Length=1431
TGTAGTATTCAAGAGGGAGACCAACACTTTTAAAAAAACTTTGAAATAACTTTCAGGTAG
TGAAAATTATTGTAAACAACAATGCAAGAAGGGTACAGATAACTGTAGTAAAACAAAAAT
GGGCGAATAGAAGAAAAATCTAATGCATGCCAACCCCCATAAAAATATCTGTAGACTTTT
TTTTATTTGAGAAAAGTCAAGTTATATTTGTTATACTAAAAATTATTACAATCTTTCAAA
TAAAAAAGTACAAAGTATTTGTGCATAAACTTGACTATCGCAAGAATCTCAAAAGTGTAA
AATAGTATCGCAAATGTGGGTGTTGAGCCACTATTAAAATTTGGATTAGGAAAAAAAATT
GTTCAATAAGTAAAGAGAGAGAGACTTACTACCAATATAAAATAATGTACTCGTATTTTT
CATCATATTCACCTCAACATCATAAGTATAAAAAACACATTTTAATTTATTCTAAAATAT
TTCTAGACAAAGTGAAGAATATAATGAGTAAATAATTGAGACATTGCAAAAAGCAAATCA
TACGTGTGTTTATGTGCGAATATTACAATGAATGAAAAGACAATTTGAATTTCTCGCGCT
CTTTTGCTCACACACTTTACCTACCTACCTAGTTCTTGTTTTTTTTTCATAAAATTAACA
TTAAATATAAACAAAGTCTTGAGTATTGTGTGTGCTGTGCTCATCTAAACATGTAAAGCT
GAAAGCAAAGAGAGTTTTGTGTTTTAATTTTATTCGTCCAAATGATAGATGACATGAACT
TCGAAATAATTGACAATTGTCTTTATTCTTGACTTCTTTATTATGAATAATTGTTTTATC
TGAATGATATTACAATGACAACCACAACTAAAAAGAATTCACCCTCATCGTCTACAACTG
ATGTGAGAAGGAGTTCATCTTCATCTTCATTAGAAACGGCCGAGGATATTGAATATATTG
CAAAACAAATATCTGATCATGCTGAGGCCATTTATCAAGAATGGAAAGCAAGAGGTCTCG
CACCATCTGAAATTTTGAAATGTCATCCCGAAGCAGACAAAAAGTTTAATTCAACATTAA
GTCCATTAGTGTCTCCATCTAAACCTGTCCTAAATTTTGCTCCTTCTGAGCTATTGGTCA
ACGACGCAAATCTCTCAAATAGTAATTTAAAGCAATTAGTTAACACATTTGTGAATGAGG
ATAAAGCCCGAATAGCTGCAACCGGTGGAAAATATACTGCCTCTAATAAGAGATTAGATA
ATTCTCTAGTGCAGCAATCACCTGAGAATAATAGTAACAAAGGCATCAGCAACAGTAACA
ATAAATTTGTAATCGACGAATCATTGCAAAATTATCAAGTGCCAGATGTTCTTAGAGACA
CTATTGAGAAATGTTCTAAACTAGAAAAGCCTAAGCCACAACCTAAACCAG
>g11450.t3 Gene=g11450 Length=192
MTTTTKKNSPSSSTTDVRRSSSSSSLETAEDIEYIAKQISDHAEAIYQEWKARGLAPSEI
LKCHPEADKKFNSTLSPLVSPSKPVLNFAPSELLVNDANLSNSNLKQLVNTFVNEDKARI
AATGGKYTASNKRLDNSLVQQSPENNSNKGISNSNNKFVIDESLQNYQVPDVLRDTIEKC
SKLEKPKPQPKP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11450.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - |
| 1 | g11450.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 154 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
