General information for g11456.t84
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hsp90 co-chaperone Cdc37.
Parent gene
- The parent gene g11456 is located on chr_1: 16359059..16361209 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11456 | g11456.t84 | TTS | g11456.t84 | 16358079 | 16358079 |
| chr_1 | g11456 | g11456.t84 | isoform | g11456.t84 | 16358239 | 16358973 |
| chr_1 | g11456 | g11456.t84 | exon | g11456.t84.exon1 | 16358239 | 16358429 |
| chr_1 | g11456 | g11456.t84 | cds | g11456.t84.CDS1 | 16358397 | 16358429 |
| chr_1 | g11456 | g11456.t84 | exon | g11456.t84.exon2 | 16358577 | 16358973 |
| chr_1 | g11456 | g11456.t84 | cds | g11456.t84.CDS2 | 16358577 | 16358969 |
| chr_1 | g11456 | g11456.t84 | TSS | g11456.t84 | 16359617 | 16359617 |
Sequences
>g11456.t84 Gene=g11456 Length=588
CTTAATGAAACATACCTCTTTGGTACACGAAGATACTGCAAATTATCTCGTTATTTGGTG
CATTAATTTAGAAATGGAAGAGAAGCATGAACTGATGACACATGTTGCTCATCAATGCAT
TTGTATGCAATACATGCTTGAACTTTCTAAACAACTTAAAATTGATCCTCGAGCATGTAT
TGCTCCATTTTTTGAGAGAATTCAAACTGCTGATGTTGAGTACAAACGTCAATTTGAAGA
TGAAATTGCTGCATTTATCGGTCGTATTGAGAGACGAGCAAAGGAGAAAATTGCAGAAGC
TCTTAAAGAACAAGAGGAAGAAGAAAAACGCGAGAGACTTGCACGACTTGGACCTGGCGG
TTTGGATCCAGCTGAAGTTTTTGAAACATTGCCCAAGTTTGTTTTGAAACTCGTGATACA
GAAATGCTAAAGGAAGTAATTTCAAAAATGCCAGAAGATGAAGCAAAATATCACATGAAG
CGTTGTGTAGATTCTGGTTTATGGGTACCTGATGCAAGTCAACTACCATCATCTGAAAAT
GAGGAAGAAAATAAAACAACTCAAAACAACGATTTGGATTTGGATTAA
>g11456.t84 Gene=g11456 Length=141
MKHTSLVHEDTANYLVIWCINLEMEEKHELMTHVAHQCICMQYMLELSKQLKIDPRACIA
PFFERIQTADVEYKRQFEDEIAAFIGRIERRAKEKIAEALKEQEEEEKRERLARLGPGGL
DPAEVFETLPKFVLKLVIQKC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11456.t84 | Coils | Coil | Coil | 89 | 113 | - |
| 6 | g11456.t84 | Gene3D | G3DSA:1.20.58.610 | - | 1 | 101 | 8.0E-46 |
| 2 | g11456.t84 | PANTHER | PTHR12800:SF3 | HSP90 CO-CHAPERONE CDC37 | 3 | 134 | 6.3E-47 |
| 3 | g11456.t84 | PANTHER | PTHR12800 | CDC37-RELATED | 3 | 134 | 6.3E-47 |
| 1 | g11456.t84 | Pfam | PF08565 | Cdc37 Hsp90 binding domain | 1 | 98 | 6.5E-20 |
| 5 | g11456.t84 | SMART | SM01070 | CDC37_M_2 | 1 | 107 | 7.5E-21 |
| 4 | g11456.t84 | SUPERFAMILY | SSF101391 | Hsp90 co-chaperone CDC37 | 2 | 132 | 4.97E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
