General information for g11456.t90
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hsp90 co-chaperone Cdc37.
Parent gene
- The parent gene g11456 is located on chr_1: 16359059..16361209 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11456 | g11456.t90 | TTS | g11456.t90 | 16358079 | 16358079 |
| chr_1 | g11456 | g11456.t90 | isoform | g11456.t90 | 16358773 | 16361209 |
| chr_1 | g11456 | g11456.t90 | exon | g11456.t90.exon1 | 16358773 | 16358941 |
| chr_1 | g11456 | g11456.t90 | cds | g11456.t90.CDS1 | 16358903 | 16358941 |
| chr_1 | g11456 | g11456.t90 | exon | g11456.t90.exon2 | 16359042 | 16359424 |
| chr_1 | g11456 | g11456.t90 | cds | g11456.t90.CDS2 | 16359042 | 16359424 |
| chr_1 | g11456 | g11456.t90 | exon | g11456.t90.exon3 | 16359478 | 16359586 |
| chr_1 | g11456 | g11456.t90 | cds | g11456.t90.CDS3 | 16359478 | 16359529 |
| chr_1 | g11456 | g11456.t90 | exon | g11456.t90.exon4 | 16361103 | 16361209 |
| chr_1 | g11456 | g11456.t90 | TSS | g11456.t90 | NA | NA |
Sequences
>g11456.t90 Gene=g11456 Length=768
GTGATTCACTTTACAATTTTTCTTTCAAAATTTTTTTCTTTTCTCATATGACCAATTTTT
GTAAGTCATGTGCAATTTTAGTTGTCTCATGTTTGATGTTATTGAAGTAATTTCGAGAAA
AAAATTGTTCTTAAATTAAAAGCTAAGTAAATAAGCGATTAATCATGGTCGATTACTCAA
AGTGGAAGAATATTGAAGTATCTGATGATGAAGATGATACTCATCCAAATATCGATACAC
CAAGTCTTTTTCGTTGGAGGCATCAGGCAAGAATTGAACGTATGGAAGAAATGGAACAGC
AAAAAAAGCAATTGGAATCAGCAATTAAAGAGAATGAAAAGTTGCTAAATGATTTGAAGG
AAAAATTAAAAATATCACCCGAGGACAAAAAACTTACAGATGAAATTAAAAAACAAGAAG
CCGAAAGAATTAAATTAATGGATGTTCAGAAAGATCTTAAGAAGAAAGAACAATTGGCTC
CATGGAATGTTGACACATTATCTCAACCCAAATTTTCAAAAACAGTTATCAATAAAAAGG
ATGAGAGAAATTATGAAGAAATGACAGATGAAGAAAAGGAACAGCACATGAAAAAGTTTA
TACTGCAAATTATCTCGTTATTTGGTGCATTAATTTAGAAATGGAAGAGAAGCATGAACT
GATGACACATGTTGCTCATCAATGCATTTGTATGCAATACATGCTTGAACTTTCTAAACA
ACTTAAAATTGATCCTCGAGCATGTATTGCTCCATTTTTTGAGAGAAT
>g11456.t90 Gene=g11456 Length=157
MVDYSKWKNIEVSDDEDDTHPNIDTPSLFRWRHQARIERMEEMEQQKKQLESAIKENEKL
LNDLKEKLKISPEDKKLTDEIKKQEAERIKLMDVQKDLKKKEQLAPWNVDTLSQPKFSKT
VINKKDERNYEEMTDEEKEQHMKKFILQIISLFGALI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11456.t90 | Coils | Coil | Coil | 33 | 70 | - |
| 7 | g11456.t90 | Coils | Coil | Coil | 81 | 101 | - |
| 5 | g11456.t90 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
| 6 | g11456.t90 | MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 23 | - |
| 2 | g11456.t90 | PANTHER | PTHR12800:SF3 | HSP90 CO-CHAPERONE CDC37 | 1 | 147 | 3.2E-36 |
| 3 | g11456.t90 | PANTHER | PTHR12800 | CDC37-RELATED | 1 | 147 | 3.2E-36 |
| 1 | g11456.t90 | Pfam | PF03234 | Cdc37 N terminal kinase binding | 1 | 134 | 4.5E-14 |
| 4 | g11456.t90 | SMART | SM01071 | CDC37_N_2 | 1 | 120 | 1.4E-40 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019901 | protein kinase binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed