General information for g11456.t91
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11456 is located on chr_1: 16359059..16361209 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11456 | g11456.t91 | TTS | g11456.t91 | 16358079 | 16358079 |
| chr_1 | g11456 | g11456.t91 | isoform | g11456.t91 | 16359059 | 16360975 |
| chr_1 | g11456 | g11456.t91 | exon | g11456.t91.exon1 | 16359059 | 16359910 |
| chr_1 | g11456 | g11456.t91 | cds | g11456.t91.CDS1 | 16359060 | 16359359 |
| chr_1 | g11456 | g11456.t91 | exon | g11456.t91.exon2 | 16360060 | 16360265 |
| chr_1 | g11456 | g11456.t91 | exon | g11456.t91.exon3 | 16360769 | 16360975 |
| chr_1 | g11456 | g11456.t91 | TSS | g11456.t91 | NA | NA |
Sequences
>g11456.t91 Gene=g11456 Length=1265
TTATTTGGTATACAAGTAAATGGCAACAATCAAGCCATAAAGACCCAAAACTTCAGCAAA
GATCAGAATTAAAATCATACCAACGAAGAGTCTTGGTTGTTGAGTTGTTCCTCTTACACC
GGCATCACCAACAATTCCAATGGCGAAACCTGCAGCTAAGCCTGAGAATCCTACAGCAAG
TCCAGCACCGAGATGAATGAAGGCTCTTGTAAAGAGTGTATTTTGGTGGTTCTTCGAGGG
CTCCAGCAATAAGAACAGCAACTACAAGTCCATAAATAGCAATAATACCTGCCATAACAA
CGGGAATAATTGATTTCATAATCAACTCAGGTCTCATGACACTCATTGCCGCGATTCCCG
TTCCAGATTTCGCAGTTCCATAAGCAGCGCCAAGTGCTATAAGGATTAAAAAACTGCTGC
TCCCATAACTCCAAAAAATGGTCCATAAATTGGTGCTTCTTCTGGTAATGCCATTTCTAA
CGATTGAAAGTTTGTATTTTCACTTAAAAATCACTTGAAAATTTATTAATGGCAATGAAT
GAGAACTTCACAACTTTTCAATTCTGATGTCGTCCGAAATCTGAGAAAACTTTTCGTGCG
AACTCAAAATTACAGAAAAATGCCTTGTAAAAAATTGTGCAATTTTTAAAAGTGTTTTTT
GAAAATTGTAATTTTTTAAAAAAAAAACGTTGAGCTTCAAAAAAACATTCCCCTAAAAAA
TTTTTTATTATTGATAGTAATTTCGAGAAAAAAATTGTTCTTAAATTAAAAGCTAAGTAA
ATAAGCGATTAATCATGGTCGATTACTCAAAGTGGAAGAATATTGAAGTATCTGATGATG
AAGATGGTAAGGTTTTTATGCAATTCACATCAAGAACTAGCTAAAATTTGTTTTTTTAGA
TACTCATCCAAATATCGATACACCAAGTCTTTTTCGTTGGAGGCATCAGGCAAGAATTGA
ACGTATGGAAGAAATGGAACAGCAAAAAAAGCAATTGGAATCAGCAATTAAAGAGAATGA
AAAGTTGCTAAATGATTTGAAGGAAAAATTAAAAATATCACCCGAGGACAAAAAACTTAC
AGATGAAATTAAAAAACAAGAAGCCGAAAGAATTAAATTAATGGATGTTCAGAAAGATCT
TAAGAAGAAAGAACAATTGGCTCCATGGAATGTTGACACATTATCTCAACCCAAATTTTC
AAAAACAGTTATCAATAAAAAGGATGAGAGAAATTATGAAGAAATGACAGATGAAGAAAA
GGAAC
>g11456.t91 Gene=g11456 Length=100
MEEMEQQKKQLESAIKENEKLLNDLKEKLKISPEDKKLTDEIKKQEAERIKLMDVQKDLK
KKEQLAPWNVDTLSQPKFSKTVINKKDERNYEEMTDEEKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11456.t91 | Coils | Coil | Coil | 1 | 31 | - |
| 1 | g11456.t91 | Coils | Coil | Coil | 42 | 62 | - |
| 3 | g11456.t91 | Coils | Coil | Coil | 84 | 100 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
