Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative V-type proton ATPase 16 kDa proteolipid subunit.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11457 g11457.t13 TSS g11457.t13 16359741 16359741
chr_1 g11457 g11457.t13 isoform g11457.t13 16359850 16361615
chr_1 g11457 g11457.t13 exon g11457.t13.exon1 16359850 16359928
chr_1 g11457 g11457.t13 cds g11457.t13.CDS1 16359878 16359928
chr_1 g11457 g11457.t13 exon g11457.t13.exon2 16360148 16360266
chr_1 g11457 g11457.t13 cds g11457.t13.CDS2 16360148 16360266
chr_1 g11457 g11457.t13 exon g11457.t13.exon3 16360771 16361615
chr_1 g11457 g11457.t13 cds g11457.t13.CDS3 16360771 16360975
chr_1 g11457 g11457.t13 TTS g11457.t13 16361611 16361611

Sequences

>g11457.t13 Gene=g11457 Length=1043
ATGGCATTACCAGAAGAAGCACCAATTTATGGACCATTTTTTGGAGTTATGGGAGCAGCA
GCTGCCATTATTTTCAGCGTTGATTATGAAATCAATTATTCCCGTTGTTATGGCAGGTAT
TATTGCTATTTATGGACTTGTAGTTGCTGTTCTTATTGCTGGAGCCCTCGAAGAACCACC
AAAATACACTCTTTACAAAGCCTTCATTCATCTCGGTGCTGGACTTGCTGTAGGATTCTC
AGGCTTAGCTGCAGGTTTCGCCATTGGAATTGTTGGTGATGCCGGTGTAAGAGGAACAAC
TCAACAACCAAGACTCTTCGTTGGTATGATTTTAATTCTGATCTTTGCTGAAGTTTTGGG
TCTTTATGGCTTGATTGTTGCCATTTACTTGTATACCAAATAAATTTTCTTTTTTCGCTT
TTACTCTAAGTTACGATTATTTATATTCAAATATAAGATTCCTTTACATTTTTCATTCAC
TCAAAACTTGCATTAAATATTAATGATGATGTGATATTAATATATCCTACCTTCAATAAC
ATCAAACATGAGACAACTAAAATTGCACATGACTTACAAAAATTGGTCATATGAGAAAAG
AAAAAAATTTTGAAAGAAAAATTGTAAAGTGAATCACAGTGTTTCGGTGAACAAAAAAGA
AAATTTTATAGAATGAACGCACGTGAGAGAGAAAGACGTATCAAGCCAAAATTTACAATA
TTTACAAATTGATGCTGTTTTTAAATAATTGTAAACCATATTGATACGACTGAATTAGTT
CTATTAAATTTTCTTTTTTCAATAAAAAATTAAAATCAATCATTTTTTTGAATCACGTGT
AACCGATTAGTTACTATCATTCAATTGCTAATATCCATATTAAAATTACATAAAAATAAA
TTTTATTAAAGGAAAGAAAAGAAAACTTATTAAGTACATCATTCATAATGAGAACATTGT
TGTTGTATCAATTGAAAATATCATTAAAAACTGCTCTAGAATAATACAGTGCACATAAAA
TAAAAGTAATTTTTAAGATAGTT

>g11457.t13 Gene=g11457 Length=124
MDHFLELWEQQLPLFSALIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPPKYTLYKAFI
HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTTQQPRLFVGMILILIFAEVLGLYGLIVAIY
LYTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g11457.t13 CDD cd18176 ATP-synt_Vo_c_ATP6C_rpt2 55 122 1.25697E-31
9 g11457.t13 Gene3D G3DSA:1.20.120.610 - 14 124 6.1E-42
3 g11457.t13 PANTHER PTHR10263 V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 17 124 5.5E-51
4 g11457.t13 PANTHER PTHR10263:SF5 V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT 17 124 5.5E-51
5 g11457.t13 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 23 47 1.1E-42
6 g11457.t13 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 73 99 1.1E-42
7 g11457.t13 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 100 123 1.1E-42
2 g11457.t13 Pfam PF00137 ATP synthase subunit C 18 43 3.2E-6
1 g11457.t13 Pfam PF00137 ATP synthase subunit C 62 121 3.4E-22
13 g11457.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 22 -
14 g11457.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 23 47 -
11 g11457.t13 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 48 58 -
15 g11457.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 59 83 -
12 g11457.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 84 94 -
16 g11457.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 95 122 -
10 g11457.t13 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 123 124 -
8 g11457.t13 SUPERFAMILY SSF81333 F1F0 ATP synthase subunit C 53 123 1.7E-20
21 g11457.t13 TIGRFAM TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit 17 87 1.0E-32
19 g11457.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 23 45 -
20 g11457.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 58 80 -
18 g11457.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 100 122 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0033179 proton-transporting V-type ATPase, V0 domain CC
GO:1902600 proton transmembrane transport BP
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain CC
GO:0015078 proton transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed