Gene loci information

Transcript annotation

  • This transcript has been annotated as V-type proton ATPase 16 kDa proteolipid subunit.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11457 g11457.t14 TSS g11457.t14 16359741 16359741
chr_1 g11457 g11457.t14 isoform g11457.t14 16359850 16361615
chr_1 g11457 g11457.t14 exon g11457.t14.exon1 16359850 16359928
chr_1 g11457 g11457.t14 cds g11457.t14.CDS1 16359878 16359928
chr_1 g11457 g11457.t14 exon g11457.t14.exon2 16360088 16360266
chr_1 g11457 g11457.t14 cds g11457.t14.CDS2 16360088 16360266
chr_1 g11457 g11457.t14 exon g11457.t14.exon3 16360771 16361615
chr_1 g11457 g11457.t14 cds g11457.t14.CDS3 16360771 16360975
chr_1 g11457 g11457.t14 TTS g11457.t14 16361611 16361611

Sequences

>g11457.t14 Gene=g11457 Length=1103
ATGGCATTACCAGAAGAAGCACCAATTTATGGACCATTTTTTGGAGTTATGGGAGCAGCA
GCTGCCATTATTTTCAGCGGCTTATGGAACTGCGAAATCTGGAACGGGAATCGCGGCAAT
GAGTGTCATGAGACCTGAGTTGATTATGAAATCAATTATTCCCGTTGTTATGGCAGGTAT
TATTGCTATTTATGGACTTGTAGTTGCTGTTCTTATTGCTGGAGCCCTCGAAGAACCACC
AAAATACACTCTTTACAAAGCCTTCATTCATCTCGGTGCTGGACTTGCTGTAGGATTCTC
AGGCTTAGCTGCAGGTTTCGCCATTGGAATTGTTGGTGATGCCGGTGTAAGAGGAACAAC
TCAACAACCAAGACTCTTCGTTGGTATGATTTTAATTCTGATCTTTGCTGAAGTTTTGGG
TCTTTATGGCTTGATTGTTGCCATTTACTTGTATACCAAATAAATTTTCTTTTTTCGCTT
TTACTCTAAGTTACGATTATTTATATTCAAATATAAGATTCCTTTACATTTTTCATTCAC
TCAAAACTTGCATTAAATATTAATGATGATGTGATATTAATATATCCTACCTTCAATAAC
ATCAAACATGAGACAACTAAAATTGCACATGACTTACAAAAATTGGTCATATGAGAAAAG
AAAAAAATTTTGAAAGAAAAATTGTAAAGTGAATCACAGTGTTTCGGTGAACAAAAAAGA
AAATTTTATAGAATGAACGCACGTGAGAGAGAAAGACGTATCAAGCCAAAATTTACAATA
TTTACAAATTGATGCTGTTTTTAAATAATTGTAAACCATATTGATACGACTGAATTAGTT
CTATTAAATTTTCTTTTTTCAATAAAAAATTAAAATCAATCATTTTTTTGAATCACGTGT
AACCGATTAGTTACTATCATTCAATTGCTAATATCCATATTAAAATTACATAAAAATAAA
TTTTATTAAAGGAAAGAAAAGAAAACTTATTAAGTACATCATTCATAATGAGAACATTGT
TGTTGTATCAATTGAAAATATCATTAAAAACTGCTCTAGAATAATACAGTGCACATAAAA
TAAAAGTAATTTTTAAGATAGTT

>g11457.t14 Gene=g11457 Length=144
MDHFLELWEQQLPLFSAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
VLIAGALEEPPKYTLYKAFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTTQQPRLFVGM
ILILIFAEVLGLYGLIVAIYLYTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
20 g11457.t14 CDD cd18175 ATP-synt_Vo_c_ATP6C_rpt1 15 67 8.21509E-24
21 g11457.t14 CDD cd18176 ATP-synt_Vo_c_ATP6C_rpt2 75 142 6.61483E-32
10 g11457.t14 Gene3D G3DSA:1.20.120.610 - 11 144 1.4E-52
3 g11457.t14 PANTHER PTHR10263 V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 15 144 2.9E-64
4 g11457.t14 PANTHER PTHR10263:SF5 V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT 15 144 2.9E-64
7 g11457.t14 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 17 41 8.4E-59
6 g11457.t14 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 43 67 8.4E-59
5 g11457.t14 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 93 119 8.4E-59
8 g11457.t14 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 120 143 8.4E-59
2 g11457.t14 Pfam PF00137 ATP synthase subunit C 15 63 1.5E-11
1 g11457.t14 Pfam PF00137 ATP synthase subunit C 82 141 4.9E-22
13 g11457.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
19 g11457.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 31 -
11 g11457.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 32 42 -
17 g11457.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 43 67 -
14 g11457.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 68 78 -
18 g11457.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 79 104 -
12 g11457.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 105 115 -
16 g11457.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 116 142 -
15 g11457.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 143 144 -
9 g11457.t14 SUPERFAMILY SSF81333 F1F0 ATP synthase subunit C 73 143 2.48E-20
26 g11457.t14 TIGRFAM TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit 15 107 1.9E-46
25 g11457.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -
24 g11457.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 44 66 -
22 g11457.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 79 101 -
23 g11457.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 116 138 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0033179 proton-transporting V-type ATPase, V0 domain CC
GO:1902600 proton transmembrane transport BP
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain CC
GO:0015078 proton transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values