Gene loci information

Transcript annotation

  • This transcript has been annotated as Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1146 g1146.t1 TTS g1146.t1 8399454 8399454
chr_3 g1146 g1146.t1 isoform g1146.t1 8399506 8400219
chr_3 g1146 g1146.t1 exon g1146.t1.exon1 8399506 8400219
chr_3 g1146 g1146.t1 cds g1146.t1.CDS1 8399506 8400219
chr_3 g1146 g1146.t1 TSS g1146.t1 NA NA

Sequences

>g1146.t1 Gene=g1146 Length=714
ATGGGTGTTGTTGCCACTTTAGAATTGAATGAAGCTCAAGCAGCAGGAAATACTATAGCA
TGGCAAAGATTTCTTCCAAGTGGACCAGTAGCATTACTTCCACTAACTGATAACTTAAGT
TCACTTGTATGGACCACTAATGTCGAACATGCTAAAAAACTTTTGAAAATGGAACCAGAT
GAATTTGTTGATGCACTCAATGAAGCATTTTTGAAGAAAGATAGTTCAAGTTCGGCCAAT
AGTGTGCTAAAAATAATCGATGGAATTTTACCATTTAACAAAAACAAAATGCAACAAGTA
CCTCCTAAAGTTTTAAAAGTTCAAGAAAAATCACGTGCTGCATTTCCACTTGGATTGGGT
CATGCTTCTTCATATGTTTGCAAGGGTGCTGCAGTGATCGGTGATGCAGCTCATCGAGTT
CATCCATTGGCAGGCCAAGGAGTAAATTTAGGATTTGGTGATGTTTTACAATTGACAGAA
GTTTTGGCAGAAGCTACATACAATGGTAGTGAACTTTATGATCTTCAATATTTACTTAAA
TATGAACAAGAAAGATTGAAAGCAAATGTTCCAATAATGGCAGGCGTTCATGCTCTACAA
ACATTGTATTGTAATAATTTTGCACCATTTGTACTTGCTAGAAGTTTAGGTCTGAAATTT
ACAAATTTAACGCCGCCAATCAAGAAGTTTTTCATGGATAAAGCTATAGCATAA

>g1146.t1 Gene=g1146 Length=237
MGVVATLELNEAQAAGNTIAWQRFLPSGPVALLPLTDNLSSLVWTTNVEHAKKLLKMEPD
EFVDALNEAFLKKDSSSSANSVLKIIDGILPFNKNKMQQVPPKVLKVQEKSRAAFPLGLG
HASSYVCKGAAVIGDAAHRVHPLAGQGVNLGFGDVLQLTEVLAEATYNGSELYDLQYLLK
YEQERLKANVPIMAGVHALQTLYCNNFAPFVLARSLGLKFTNLTPPIKKFFMDKAIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g1146.t1 Gene3D G3DSA:3.30.9.50 - 1 81 3.4E-18
7 g1146.t1 Gene3D G3DSA:3.50.50.60 - 106 237 3.7E-30
2 g1146.t1 PANTHER PTHR43876 UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 2 236 2.2E-72
3 g1146.t1 PANTHER PTHR43876:SF7 UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 2 236 2.2E-72
1 g1146.t1 Pfam PF01494 FAD binding domain 106 187 5.7E-9
5 g1146.t1 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 141 154 -
4 g1146.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 114 232 1.4E-20
8 g1146.t1 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 2 236 1.5E-71

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0006744 ubiquinone biosynthetic process BP
GO:0055114 NA NA
GO:0071949 FAD binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values