General information for g11464.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Tropomyosin-2.
Parent gene
- The parent gene g11464 is located on chr_1: 16393544..16395040 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11464 | g11464.t5 | isoform | g11464.t5 | 16389951 | 16393753 |
| chr_1 | g11464 | g11464.t5 | exon | g11464.t5.exon1 | 16389951 | 16390388 |
| chr_1 | g11464 | g11464.t5 | TTS | g11464.t5 | 16389991 | 16389991 |
| chr_1 | g11464 | g11464.t5 | exon | g11464.t5.exon2 | 16391592 | 16392401 |
| chr_1 | g11464 | g11464.t5 | cds | g11464.t5.CDS1 | 16392319 | 16392401 |
| chr_1 | g11464 | g11464.t5 | exon | g11464.t5.exon3 | 16393192 | 16393369 |
| chr_1 | g11464 | g11464.t5 | cds | g11464.t5.CDS2 | 16393192 | 16393369 |
| chr_1 | g11464 | g11464.t5 | exon | g11464.t5.exon4 | 16393544 | 16393753 |
| chr_1 | g11464 | g11464.t5 | cds | g11464.t5.CDS3 | 16393544 | 16393717 |
| chr_1 | g11464 | g11464.t5 | TSS | g11464.t5 | NA | NA |
Sequences
>g11464.t5 Gene=g11464 Length=1636
GTATTGGAGAATCGTGCACAGCAAGATGAAGAGCGCATGGATCAATTGACAAACCAACTT
AAAGAAGCACGTCTCCTTGCTGAAGACGCCGATGGTAAATCAGATGAAGTTTCACGCAAG
TTGGCCTTCGTTGAAGATGAATTGGAAGTTGCTGAAGATCGTGTTAAGTCAGGAGAGGCA
AAGATCATGGAACTTGAAGAAGAATTGAAGGTTGTTGGTAACTCATTGAAATCATTGGAA
GTATCAGAAGAAAAGGCTAACCAGAGAGTTGAAGAATTCAAACGTCAATTGAAATCATTG
ACAATCAAACTTAAGGAAGCCGAAAATCGTGCAGAATTGGCTGAGAAGACAGTCAAGAAA
CTGCAAAAGGAAGTTGACAGACTTGAAGACAAGCTCGCAGTTCAAAAAGAAACATACAAT
GCTATCTGCACGGATATGGACACTACCTTTGCCGAAATGGCAGGATTTTAAATCTCATTT
TAAAGTTCATAAAATTTCTCTTTTGTTCACTTATAAATCCCATTTCCAACATAATCTTTG
GTCCGATTTTTACTACATTAAAATCCAACCATAAACAAACAATCTCAAAAATTAGTAAAA
CAATAATGATACATCAATGTCATATATATATATATATACACTATGATTGTATATATTTTA
TATAAATATCTTATATTTATATTTTAACTCTTTCTTTTCCAACCATTCACAAGACAGAAC
TCAACTCATGAATCACTTGAATATCTTAGATTGTTTCTCTCCATATAAACAAGACTCTTT
TGAGGTCTCTCTCTATCCTTCAAGACAATAGATCATGATATATTATCGATTTAAATCATC
ATTATTAACCATTCTTCCTATATCACATACATACATACACACACAAACATTTTATATCTC
TTTGTACTGCTGTATTAATATAGAATTGCAAATAATGAGCAAATGATAATATAAATTTAT
TGGCTTTTACTAAATGCTATGACTAAAAACTTATATTTTCTAACATCAATATCAACAATT
ATCCTTTTCTAAATTCAAACATCATCATGAAAAATAAACATTAAAACTACTGAAAGTACA
ACGATAATGAGGGCGATGGCTAATGGCTACCAACTGGAATTCAATTAAAATCAAATAATA
TTTTAAGCCAAAAAAATAATCAAACTGCTGCTATTATTTTTAAAAAGCCTGACTTAAGAT
GAACTTGGTCTCAACAAAGACAGATACAAGTCACTTGCCGATGAAATGGATTCAACCTTT
GCTGAATTGGCAGGCTATTAAACAATCACCATTGTGTGTGAAATCGAAGCAAAGCGAAAA
CTGTGCATGTCTTGAAGAACGTTCTGTAAACAATAACTATTTATTTAAATCACATAAACA
TGATGTATCTCTTTTTTTTTGCTATTCAGATCGAATAACTTTTTTTTGTCCAACACGAGA
AAGTTACTTTTAGAAATCTCATAATGTCTTATTTTACAATACAATAATTGAAAAAGTATC
AAAAGTTCTAACATTTTTTATTGTTTTATGATGGAAAGAAAATTTTTGTGCTCTCTCTCT
TTTAAAAAACAGAAATCTTAATAAAGAAACTGTAACAAAAAAATCTTATGATGATAGATA
GAATTTATAGGAAAAT
>g11464.t5 Gene=g11464 Length=144
MDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGEAKIMELEEELKVV
GNSLKSLEVSEEKANQRVEEFKRQLKSLTIKLKEAENRAELAEKTVKKLQKEVDRLEDKL
AVQKETYNAICTDMDTTFAEMAGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g11464.t5 | Coils | Coil | Coil | 1 | 126 | - |
| 9 | g11464.t5 | Gene3D | G3DSA:1.20.5.340 | - | 20 | 119 | 7.1E-19 |
| 2 | g11464.t5 | PANTHER | PTHR19269:SF53 | TROPOMYOSIN-2 | 1 | 143 | 3.1E-78 |
| 3 | g11464.t5 | PANTHER | PTHR19269 | TROPOMYOSIN | 1 | 143 | 3.1E-78 |
| 6 | g11464.t5 | PRINTS | PR00194 | Tropomyosin signature | 5 | 33 | 9.0E-30 |
| 5 | g11464.t5 | PRINTS | PR00194 | Tropomyosin signature | 35 | 58 | 9.0E-30 |
| 4 | g11464.t5 | PRINTS | PR00194 | Tropomyosin signature | 91 | 116 | 9.0E-30 |
| 1 | g11464.t5 | Pfam | PF00261 | Tropomyosin | 1 | 142 | 1.5E-47 |
| 8 | g11464.t5 | ProSitePatterns | PS00326 | Tropomyosins signature. | 92 | 100 | - |
| 7 | g11464.t5 | SUPERFAMILY | SSF57997 | Tropomyosin | 1 | 143 | 5.56E-44 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
