General information for g11466.t79
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11466 is located on chr_1: 16405874..16407076 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11466 | g11466.t79 | isoform | g11466.t79 | 16402266 | 16405690 |
| chr_1 | g11466 | g11466.t79 | exon | g11466.t79.exon1 | 16402266 | 16402962 |
| chr_1 | g11466 | g11466.t79 | exon | g11466.t79.exon2 | 16403391 | 16403528 |
| chr_1 | g11466 | g11466.t79 | cds | g11466.t79.CDS1 | 16403391 | 16403528 |
| chr_1 | g11466 | g11466.t79 | exon | g11466.t79.exon3 | 16404974 | 16405690 |
| chr_1 | g11466 | g11466.t79 | cds | g11466.t79.CDS2 | 16404974 | 16405639 |
| chr_1 | g11466 | g11466.t79 | TSS | g11466.t79 | 16405778 | 16405778 |
| chr_1 | g11466 | g11466.t79 | TTS | g11466.t79 | NA | NA |
Sequences
>g11466.t79 Gene=g11466 Length=1552
ATAGAAAAAAAATATGTGATAAAGAAATTTTCACCAAATGGCATTAACACAATGACTGAA
AGAAGTGCTCATCCGACAAATAAATCTAGGCGAGGTCATCAATATCATCCCAAAAATATA
GGCAGCAGAGGAACTTGTCGTAATGTTCCGACAAGTGAAATAATTGAAGCTCTGAGGGAG
GGCAGAAACTTGGAGTCATTATTTATACAGCATCATCAAAGTCAACATGAAAATATTCAA
TCCGATTTACCATCAGACTTAACATTATCAACATCATCAGATGCATCAAGTCAATCTGAT
CAAACTACAACATTTCACAATTTGGATTTTAATTCGAGAGAAGAATTTCAAGAAAACATT
AGCGAAGAAATTTCAATATCCAGCAACACACAAAAATATTCAAAGAGTTCAGAGCCAAAG
AGGAAGAGAAGTAAGGGTTCACAAAATGACGTACTGAGAGTTGTGCAATCAACAAGCAAT
GAAATCCTTAATAATATCAATGAAGACGATGATGCCGAAATGGTGGAGCTAGCTAAACTG
CGATGTACGAGTGAGAGAACTGAAGTTATCGCCGAACGAGAACACCGAAGACAAAAGAAG
TGTGCAGATTATCCTGGTCTTGCATTCGGACGATCGATCTTTAGCTCAGATTCAATGATG
AAATTTAATATAATTAGAAATGAATTACAAAATATCATGAATAATCAATTAAGAAGGGCT
GAATCAGAAGTCGCTGCTTTGAACCGTCGTATTCAACTTTTGGAAGAAGACCTCGAACGT
TCTGAAGAGCGTTTGGCATCTGCTACCGCAAAGTTGTCAGAAGCATCAGCTGCTGCTGAT
GAATCTGAACGGTAATGCCCGTAAAGTTCTTGAAAACCGTTCACTTGCCGATGAAGAGCG
TATGGATGCTCTTGAAAATCAATTGAAGGAAGCTCGCTTCCTCGCTGAAGAAGCTGACAA
GAAATACGATGAGGTGCAAAAACTAGACAAAATAACTTGACTCTAATAACTCTAAATAAT
TTTTTTCCCATTAATAACAACAATGATGATGTTTTTTTCTCTTTTTGTATTCGCAATACT
GTTTTGGAATGAGAAAGAGTGATAAATCACTTGCCTTAATAACTCAAGAGTTAGGAACTT
TTTAAGCAACCAAGAATATGCCTAAAACAAGAACGATAGATATCTATACATATTTAAAAA
CGAAAACAATGTTCTTGATGTAATATTTGATGACTAAAACATAATTACATACTAATTTTT
TTCAACAATTTCATAATAAATTATTATTTCATTTTTTAAATGCATTGCATTAAATATTTG
ATCTAATTTTTATTAAAAAAATTATTGTAAAAGAATAAAATTTATCAATTCAAAAAAGAC
TAATTTTTTCTGCTATACATCTTTTATGAGATTTATCTGTCATCTTTGAAATCTTTCAGG
AAACTTGCGTTAATTGTTCACAAAGATGGCAGATTGTTGTGGAAATAATTTCACCTCAAT
TAATATTTCATCTTCAAAAGATTTTAATTAACATTTTCTCTTTTGAGAAATG
>g11466.t79 Gene=g11466 Length=267
MTERSAHPTNKSRRGHQYHPKNIGSRGTCRNVPTSEIIEALREGRNLESLFIQHHQSQHE
NIQSDLPSDLTLSTSSDASSQSDQTTTFHNLDFNSREEFQENISEEISISSNTQKYSKSS
EPKRKRSKGSQNDVLRVVQSTSNEILNNINEDDDAEMVELAKLRCTSERTEVIAEREHRR
QKKCADYPGLAFGRSIFSSDSMMKFNIIRNELQNIMNNQLRRAESEVAALNRRIQLLEED
LERSEERLASATAKLSEASAAADESER
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g11466.t79 | Coils | Coil | Coil | 213 | 267 | - |
| 8 | g11466.t79 | Gene3D | G3DSA:1.20.5.340 | - | 200 | 267 | 1.6E-10 |
| 5 | g11466.t79 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - |
| 7 | g11466.t79 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 93 | - |
| 4 | g11466.t79 | MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 133 | - |
| 6 | g11466.t79 | MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 267 | - |
| 2 | g11466.t79 | PANTHER | PTHR19269 | TROPOMYOSIN | 159 | 267 | 3.2E-26 |
| 1 | g11466.t79 | Pfam | PF00261 | Tropomyosin | 217 | 267 | 2.2E-14 |
| 3 | g11466.t79 | SUPERFAMILY | SSF57997 | Tropomyosin | 215 | 267 | 1.44E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
