General information for g11466.t85
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11466 is located on chr_1: 16405874..16407076 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11466 | g11466.t85 | isoform | g11466.t85 | 16404362 | 16405778 |
| chr_1 | g11466 | g11466.t85 | exon | g11466.t85.exon1 | 16404362 | 16405778 |
| chr_1 | g11466 | g11466.t85 | TTS | g11466.t85 | 16404406 | 16404406 |
| chr_1 | g11466 | g11466.t85 | cds | g11466.t85.CDS1 | 16404932 | 16405639 |
| chr_1 | g11466 | g11466.t85 | TSS | g11466.t85 | 16405778 | 16405778 |
Sequences
>g11466.t85 Gene=g11466 Length=1417
AGAGTAAACACAATTTTGTAGAACTTGAGGTGCACAATTGAAAGAATTTGAAATACATAT
AAAAGAAAAATAATACATATAGGTATAGATAGAAAAAAAATATGTGATAAAGAAATTTTC
ACCAAATGGCATTAACACAATGACTGAAAGAAGTGCTCATCCGACAAATAAATCTAGGCG
AGGTCATCAATATCATCCCAAAAATATAGGCAGCAGAGGAACTTGTCGTAATGTTCCGAC
AAGTGAAATAATTGAAGCTCTGAGGGAGGGCAGAAACTTGGAGTCATTATTTATACAGCA
TCATCAAAGTCAACATGAAAATATTCAATCCGATTTACCATCAGACTTAACATTATCAAC
ATCATCAGATGCATCAAGTCAATCTGATCAAACTACAACATTTCACAATTTGGATTTTAA
TTCGAGAGAAGAATTTCAAGAAAACATTAGCGAAGAAATTTCAATATCCAGCAACACACA
AAAATATTCAAAGAGTTCAGAGCCAAAGAGGAAGAGAAGTAAGGGTTCACAAAATGACGT
ACTGAGAGTTGTGCAATCAACAAGCAATGAAATCCTTAATAATATCAATGAAGACGATGA
TGCCGAAATGGTGGAGCTAGCTAAACTGCGATGTACGAGTGAGAGAACTGAAGTTATCGC
CGAACGAGAACACCGAAGACAAAAGAAGTGTGCAGATTATCCTGGTCTTGCATTCGGACG
ATCGATCTTTAGCTCAGATTCAATGATGAAATTTAATATAATTAGAAATGAATTACAAAA
TATCATGAATAATCAATTAAGAAGGGTAAGAATCAGGAGAAAAAAAAGGGAAAATTTAAA
GAAATAATCGTAAACTAATATTTTAAAGACTTGAATTAATATTCAACTGATCGTTTAAAT
CTGAGCAAAAAAAGAATTTAACGATCGCTTAAATTTTATAAAATGCGATGGAAAACCTTT
CATTTTGAAATGTTTAAGAAATGTCTGAATATGAGAATTGTTTGAGGGTTACGTCACATG
AAAAGCATTCAGATAAAATTTAGTAGAGCGCTATAGCAAAAGAGAACATACCATTTACAC
ACTTGACATGAACTTTGTACAAAACCAATTAGGTTTCGCCCATTTTTTTATTGATGACTT
AAATCATTCCGCGAGTGAGTTTTAAGTAAATTAAAGTGATAAATAACAAATATTAATTAA
TTTCAATCTTTTCCTCACTATATTTGATCATTAATAATTCGATTTATCTTGGTTATAGTT
GTAAAATTTTCAAGTTACACTGAAAATTTTGTATTTTAAAAAAGAAGAAGTATTAGCAAT
TGAGCGAAAAAAATTTGAGTTTTGCGGTGTGGTGTTCTAATTTTTAACTAAGTAAAAAAG
AAAAAAATATTTTTTAAGTGAAATTTAATACTAAAGA
>g11466.t85 Gene=g11466 Length=235
MTERSAHPTNKSRRGHQYHPKNIGSRGTCRNVPTSEIIEALREGRNLESLFIQHHQSQHE
NIQSDLPSDLTLSTSSDASSQSDQTTTFHNLDFNSREEFQENISEEISISSNTQKYSKSS
EPKRKRSKGSQNDVLRVVQSTSNEILNNINEDDDAEMVELAKLRCTSERTEVIAEREHRR
QKKCADYPGLAFGRSIFSSDSMMKFNIIRNELQNIMNNQLRRVRIRRKKRENLKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g11466.t85 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - |
| g11466.t85 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 93 | - |
| g11466.t85 | MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 132 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
