General information for g1148.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial.
Parent gene
- The parent gene g1148 is located on chr_3: 8404350..8405021 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1148 | g1148.t1 | isoform | g1148.t1 | 8404350 | 8405021 |
| chr_3 | g1148 | g1148.t1 | exon | g1148.t1.exon1 | 8404350 | 8404798 |
| chr_3 | g1148 | g1148.t1 | cds | g1148.t1.CDS1 | 8404350 | 8404798 |
| chr_3 | g1148 | g1148.t1 | exon | g1148.t1.exon2 | 8404865 | 8405021 |
| chr_3 | g1148 | g1148.t1 | cds | g1148.t1.CDS2 | 8404865 | 8405021 |
| chr_3 | g1148 | g1148.t1 | TSS | g1148.t1 | 8405039 | 8405039 |
| chr_3 | g1148 | g1148.t1 | TTS | g1148.t1 | NA | NA |
Sequences
>g1148.t1 Gene=g1148 Length=606
ATGTTGCTATTAAAAAATACGAAGCAAATTTTAAAACAAAATTCTTTATGTCTTCTTCGA
CATTTTAGTGCAATAGCATCAATATATGACACTAATCATTATGATATTGTTATTGCTGGT
GGAGGATTGGTAGGAATCGGCTTAGCTGCTTCATTAGCTAAAAATGAAACTCTTAGCGAC
AAAAAGATTTTACTTCTTGAAGGAGCTCCTAAATTTAAAGCACAAACTCGCGAAGCATAT
AGCAATCGTGTATCAGCTATTAATAAACAGTCAATTCGTTTACTCAAAACTATAGATGCA
TGGGATTTTATTGAATCAATTCGTGTAAAACCGATCATGCAGATGCTTGTATGGGACGGA
ATAACAGATGAAGTTATAAGTTTTAATCACCCTAATTTCAATGAAAATGTAGCCTGCATT
GTTGAAAATGATTTAATGTTAGAAGGCATGTATATGCAAATTGAAAAACTCTTGAATGTT
CATATCAAAAATGAATCGAGACTTGAGAGTTGTCTATTGCCAAAAGACAGCAAAATTGAT
CAAACTGTAATCACTCTAAATTCTGGCGAAAAATTTACATGTGATTTATTGGTAAGTTGT
CTATAA
>g1148.t1 Gene=g1148 Length=201
MLLLKNTKQILKQNSLCLLRHFSAIASIYDTNHYDIVIAGGGLVGIGLAASLAKNETLSD
KKILLLEGAPKFKAQTREAYSNRVSAINKQSIRLLKTIDAWDFIESIRVKPIMQMLVWDG
ITDEVISFNHPNFNENVACIVENDLMLEGMYMQIEKLLNVHIKNESRLESCLLPKDSKID
QTVITLNSGEKFTCDLLVSCL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g1148.t1 | Gene3D | G3DSA:3.50.50.60 | - | 32 | 200 | 0 |
| 1 | g1148.t1 | PANTHER | PTHR43876 | UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL | 27 | 200 | 0 |
| 2 | g1148.t1 | PANTHER | PTHR43876:SF7 | UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL | 27 | 200 | 0 |
| 3 | g1148.t1 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 33 | 200 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
