General information for g11491.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Unconventional myosin-Ic.
Parent gene
- The parent gene g11491 is located on chr_1: 16598572..16599945 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11491 | g11491.t4 | isoform | g11491.t4 | 16598572 | 16599945 |
| chr_1 | g11491 | g11491.t4 | exon | g11491.t4.exon1 | 16598572 | 16598787 |
| chr_1 | g11491 | g11491.t4 | cds | g11491.t4.CDS1 | 16598572 | 16598787 |
| chr_1 | g11491 | g11491.t4 | exon | g11491.t4.exon2 | 16598850 | 16599036 |
| chr_1 | g11491 | g11491.t4 | cds | g11491.t4.CDS2 | 16598850 | 16599036 |
| chr_1 | g11491 | g11491.t4 | exon | g11491.t4.exon3 | 16599092 | 16599296 |
| chr_1 | g11491 | g11491.t4 | cds | g11491.t4.CDS3 | 16599092 | 16599111 |
| chr_1 | g11491 | g11491.t4 | exon | g11491.t4.exon4 | 16599354 | 16599424 |
| chr_1 | g11491 | g11491.t4 | exon | g11491.t4.exon5 | 16599629 | 16599945 |
| chr_1 | g11491 | g11491.t4 | TSS | g11491.t4 | 16600046 | 16600046 |
| chr_1 | g11491 | g11491.t4 | TTS | g11491.t4 | NA | NA |
Sequences
>g11491.t4 Gene=g11491 Length=996
ATGGAGAGAGAAATTTATGATCGCGACCGTGCCGGTGTATCTGATGCAGTTTTATTAGAA
GACTATACAAGTGATGACGTATTTATTGCCAATCTTCAGAAACGATTCCATGAAAATATC
ATTTACGTAAGAACGTCCTATGATGTCATTGATTTTAATATGCGGCACTAAAAACTATTG
TATATTGTTTTTTAATTATAGACATATATTGGTCAAGTACTTGTTTCTGTAAATCCATAT
AAAGAACTTCCAATTTATTCTGAGCAGGATATTCAAACATATAGAAAGAAATATTTCTTC
GAGAATCCTCCCCATGTTTTTGCCACAAGTGATAACGCTTTTCGTTTACTTATTGAAGAA
AATCGTAGTCAATGTATTTTGATATCAGGTGAGAGTGGCAGTGGTAAGACTGAGAATTCA
AAGAAAATTTTACAGTACATAGCAGCAGCTTCTGGCCATGTCGAAAGCGTTGAATCTGTG
AAGGACAAATTGTTACAAACTAATCCAATTTTGGAGGCCTTTGGTAATGCCAAGACTAAC
AGAAATAACAATTCTTCGAGATTTGGAAAGTATATGGATATAAATTTTAACTGGCAAGGA
GTCCCAGATGGTGGAGACATTTTAAACTATCTTCTTGAAAAATCGCGTATTGTTCATCAA
AATGCAAACGAGAGAAATTTCCACATTTTTTATCAGCTTCTAAGTGGCGGTGATGAGCAG
CTTTTAGAAAAATTGCATCTTAAGCGCAATTTTGCAGATTATTCATATATAAGTGGTGGC
GACATTTTGCCAAGCACAGATAAGAACTTGGACGATGCAAACAATTTTAAAGTAGTGATG
AATGCAATGAATACTATTGAAATTCCTAAAGAAGAACAAGATGAATTACTTGATATTGTT
GCAAGTGTATTGCATTTGGGAAATATTACTTTCGGTGTCGGTGAAAAAGGTCATAGCACA
GTTTATGAAAATGAAGCAGTTCATGCTTTTGCAAAT
>g11491.t4 Gene=g11491 Length=141
MDINFNWQGVPDGGDILNYLLEKSRIVHQNANERNFHIFYQLLSGGDEQLLEKLHLKRNF
ADYSYISGGDILPSTDKNLDDANNFKVVMNAMNTIEIPKEEQDELLDIVASVLHLGNITF
GVGEKGHSTVYENEAVHAFAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11491.t4 | Gene3D | G3DSA:3.40.850.10 | Kinesin | 1 | 33 | 0.000 |
| 6 | g11491.t4 | Gene3D | G3DSA:1.10.10.820 | - | 34 | 93 | 0.000 |
| 5 | g11491.t4 | Gene3D | G3DSA:1.20.120.720 | - | 94 | 135 | 0.000 |
| 2 | g11491.t4 | PANTHER | PTHR13140:SF353 | UNCONVENTIONAL MYOSIN-IH | 1 | 137 | 0.000 |
| 3 | g11491.t4 | PANTHER | PTHR13140 | MYOSIN | 1 | 137 | 0.000 |
| 1 | g11491.t4 | Pfam | PF00063 | Myosin head (motor domain) | 1 | 138 | 0.000 |
| 8 | g11491.t4 | ProSiteProfiles | PS51456 | Myosin motor domain profile. | 1 | 141 | 43.478 |
| 4 | g11491.t4 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 136 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016459 | myosin complex | CC |
| GO:0003774 | cytoskeletal motor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed