Gene loci information

Transcript annotation

  • This transcript has been annotated as Mediator of RNA polymerase II transcription subunit 13.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11494 g11494.t1 isoform g11494.t1 16615827 16625383
chr_1 g11494 g11494.t1 exon g11494.t1.exon1 16615827 16615892
chr_1 g11494 g11494.t1 cds g11494.t1.CDS1 16615827 16615892
chr_1 g11494 g11494.t1 exon g11494.t1.exon2 16617117 16617450
chr_1 g11494 g11494.t1 cds g11494.t1.CDS2 16617117 16617450
chr_1 g11494 g11494.t1 exon g11494.t1.exon3 16617507 16617669
chr_1 g11494 g11494.t1 cds g11494.t1.CDS3 16617507 16617669
chr_1 g11494 g11494.t1 exon g11494.t1.exon4 16617893 16618284
chr_1 g11494 g11494.t1 cds g11494.t1.CDS4 16617893 16618284
chr_1 g11494 g11494.t1 exon g11494.t1.exon5 16618356 16618622
chr_1 g11494 g11494.t1 cds g11494.t1.CDS5 16618356 16618622
chr_1 g11494 g11494.t1 exon g11494.t1.exon6 16618683 16618803
chr_1 g11494 g11494.t1 cds g11494.t1.CDS6 16618683 16618803
chr_1 g11494 g11494.t1 exon g11494.t1.exon7 16619126 16619218
chr_1 g11494 g11494.t1 cds g11494.t1.CDS7 16619126 16619218
chr_1 g11494 g11494.t1 exon g11494.t1.exon8 16619286 16619363
chr_1 g11494 g11494.t1 cds g11494.t1.CDS8 16619286 16619363
chr_1 g11494 g11494.t1 exon g11494.t1.exon9 16619474 16619926
chr_1 g11494 g11494.t1 cds g11494.t1.CDS9 16619474 16619926
chr_1 g11494 g11494.t1 exon g11494.t1.exon10 16619992 16620358
chr_1 g11494 g11494.t1 cds g11494.t1.CDS10 16619992 16620358
chr_1 g11494 g11494.t1 exon g11494.t1.exon11 16620424 16620795
chr_1 g11494 g11494.t1 cds g11494.t1.CDS11 16620424 16620795
chr_1 g11494 g11494.t1 exon g11494.t1.exon12 16620857 16624519
chr_1 g11494 g11494.t1 cds g11494.t1.CDS12 16620857 16624519
chr_1 g11494 g11494.t1 exon g11494.t1.exon13 16624589 16624739
chr_1 g11494 g11494.t1 cds g11494.t1.CDS13 16624589 16624739
chr_1 g11494 g11494.t1 exon g11494.t1.exon14 16624799 16624941
chr_1 g11494 g11494.t1 cds g11494.t1.CDS14 16624799 16624941
chr_1 g11494 g11494.t1 exon g11494.t1.exon15 16625003 16625383
chr_1 g11494 g11494.t1 cds g11494.t1.CDS15 16625003 16625383
chr_1 g11494 g11494.t1 TSS g11494.t1 NA NA
chr_1 g11494 g11494.t1 TTS g11494.t1 NA NA

Sequences

>g11494.t1 Gene=g11494 Length=7044
ATGACGCAAAACCACCAAACTAACGGCGCAAGTTTGGAAGATTGCCACACAAACTTTTTT
GCTTTGGCTGATTTATGCGGAATAAAATGGAAAAAGTTAGTTTTAAGCGAGAGACCGCAT
GCAACAGCAGATTCAGATCCATTAGATGATCCAGTACTTAAATCTTATACAAAATGTTTA
GCTAAGGATATTCTGTGCGTGTGGCGTCGAGTTTCACAGCACAAAAATGATTTAGATCAA
ACAGGTGGCCTTGGGCTTGGGATGTTTGATATTAGTCAAAATATGACTGTAACTCATCCA
CCACTATCGTTAACAGCAGCAAAAGAATTATGGATATTTTGGTACGGAGAAGAGCCAGAT
CTAATTGATTTAGTGTCACCTGAACTTTTAAAATCATCAGATTTAGGAGAACAAGGTTCA
TGGGAGAGCGGCTTATCATATGAATGTAGATCTCTGCTGTTTAAAGCACTTCATAATTTA
ATAGAAAGATGCTTACTTTCGAGGGAAATAATTCGATTAGGAAAATGGTTTGTGCAACCA
GTCAATAATGAAGATGAAAACAGTACTGCTCATTTGTCATTTTCCTTTGCGTTCTTCGTA
CATGGCGATAGTACAGTATGTGCATCTATGGACATACGGGAGCATCCTCCAGTTCGTCAT
TTGACTGAGGATGATTTAAATAACGTAATTAAAAGTTTAGATCAAAATGATGATAGCTGT
TCTCTTGATGGAACAGAACAAAAAGACGAAATTAATATAAATAATAAAGCTAATATGCAA
TCGGTAATTTTGGCACCGTTTGGCCTATCAGCAGTATTATCTAATACAAAAAATGAAAAT
GTTGATCAGTATGCTGAGAAAATTATCAACGATTGGAATACATTTTATCCAATGAAAAAG
CTCGACAATGACACCTCATCTTCAAAGTTACCTCAACTTGTGGAAGTAATTTCAGGTGGT
GTCAAAATGTTATATCCTTCAAAATATGTATTAATAACAAAATTAGATGTAGAAAATAAG
ATTGATAAGTGCACTAATGAAAATAAGAAGTGTCTAGATATTAATCGAAAATGTAAAACA
AATAAAATTGAAACAGACTGTATGGAACAAAGTTTCTCGGATGGTATTCAAAAAACAGTA
AGTGGAGTGCTTCCTGAGCGTGTTTGGCAAGACGTAATTATGAATCCAGCTTATACTTCA
AAATCGTCATCAACTGATAAAACTAATAATTTTATAGACGTCAGCTTAACGTCGTCCAAA
GCAGAAGGCGAAAGAAATAATAGCGTTGGAAGTTTGTGGAATTTTGTTGAGCCCTGTTTG
AAAAACTCTTGTGCGTGTAAAAGAAGTGGAAAATCACAATCTACAGGAAATTCTTCCCTT
GGAAAGTCGAGCATTCGAAGTTATAGTAATCGTACTCGAACACCCTTCCATAAACGATCT
GAATCTTCAACATCAAAATTGATTGATGGCTCCGCAAATGAATCTGCTATAGCAGCAAAA
AAATATAATATCAGATCTGCTGATAAAAATGTATCAGCAAGTACAAGTGGAGGAGGTAAC
AGCAGTGAAGCACAACAAATGTCGATCGGATCTGTTGGAACAGCCTCACCAATGCAACAT
AATTCACAACCGTCTTCGATACAAGTCAATGAACAAAATGCAATTTCTCCTACACAGCAA
AATGATGCTTCTTCTCATCCATCAACTCCAATTATAGAAAATAATAATGATCAAAAATCT
GAAATTGAAAATTTCAAAACATCTCAAGAACAAAACAAATCGGAAAATTCACAGCAAAAT
TCATCACATGGAGGCAATGACTCTTCGAAATCATCAAAAAATATTGAATCAAAAGAAAAT
CAACGTCTAAAACGACCTTCTTTGATGATTCGTGATTGTGAAAATAATGCCGATGAAGAT
TTTTCAACCAGTCAATCTCTCTACGATTATTCCACTTGGGATGCATGGATGAATCACCCA
ATAAAACGCTTCAAATCAGATGATTCAGATCATCAAAGTAAATTTAACAACAGAAGTAAA
GTGCTGGAATATGATTTGTATGCAAACCAAAATCAAACCGAATCATCAAACTTGCCTTTC
TCAATGCAAAATAATTTCATTGCTCAAAATTCAAATGACAAGAGAAATAATTGGAAGAGT
TGTGAAGAACAAAAGAATCCCAATAATTTAAATTTTATTAAAGAAACTAAAATTGAGCAT
GAAACAGACAAACTCTCAGCGGAAAATTTATTCACAAGTGAAGGCTTACAACCATCGTAT
GCAGATTTAAATAAAATTTTTGATAATTCTGATGATAATTCAAATGATGATCATCTTGTT
GATAATACACCACCAGGATCAAACAAGTCAATTGGATGTCATCCCGATTTAGAGCTCTCT
GAACATGAAATCAAACGAGATAAAATGACATTTGGCAATTTTAATAGTTTAACTAATATC
AATCAAACGACTACACTACATAACGTAAATAGCAGTAGTATAAATGCACTAGGATTAATA
AGAAATGAAGAGTTGTCAAAAATGTTTCCAACTCCACCAAGTATTGAGCAGCACACAAAT
TCAAGTCCAGGAGGTATTTGTGGAAATATTACGGATAATTTAATGGAAACTATTGATACG
GCGATTTCACATAAAATGAGTGATTCATATCCAAATTTTGGTAGTCCAGTTGAAGAACCA
ATTGATGATTGGTCATACGTCTTTATCCCACCAAAAATGGCAAACATAATTGGATCTTCA
AAATACGCACCATTAAACAATTTATTAAGCCAAACACAACCACCTATAATTCTTCCAAAT
GACTCAATATATAAACCCTCATGGGTGAAACAAAGGGAACAAGAGGAAATGCGACGAAAT
CAAAAGGACAACACAAGTAACAAAATAGAACCTGTTGCAACAATTAAACGTGATGTTGTA
TCATCTACCACTAAACCACCCATTGTAATGGATATAAAGAAAGAAATTAAAACAGAGCCA
ATGAGTCCAATTAATAATAGTAACAAACCGAATCTGATGATGGCCAATAACAGGAATATT
AAAACCAATGATAGTAGCAATACAATTATTAACAAGCTTCTGTCATCGAAGGGACCCAGC
ATCTCTTCAAACATGTATCTCAATCATAATCGAATGTCAATTCACTCACCACTTCAATCA
CCCTCCACATTTCAACAACAGCATTTTAATAGCAACAACAATAATGCAAATGTCATGGGT
TCTGATGGAATGTTTCGTAAAACACTCGGAATGCAACAACCACCACCACCCTATGACGTT
GCAATACATAGTCCTTCTCTTAACTCTAATATGAGTAATACAAATAGTGAAGATGTCATT
AACAATAATAATGGCAATAACAAGAGAATCTCAAATTTGAAAGGTGGAATGACGATGCAG
AGACAAACGTATTCACAAAATATAGCAGAGGCCAATTCTTTGCTTGTGAATGTTTTATTA
TATGATACCTCTTTAAATATCTTTCGTGATCACAATTTTGATAGTTGCACGATTTGTGTA
TGCAATGCTACACCAAAATGTGTAGGAAATATTCGCGGCTTAGACTCGGGCATGTATTTA
TCATTGGCAACTAATTGTCACTTTCACTTGAATAATGATATTTCGGATGTTATTGAAAAG
ACTTTTGAGCCTAAAACGAATGTACAAATACATCAACAGTTTGAACAGTTTGATTCCAAG
TACATGGGAAATAATTATAATTTAGTAAATATTTTTTCAAACGAATCTCCATGTTCTGTC
CCAAATACAAATGCCTCATCAATTGTGTCAAAATATTCAAATGTTGTGACAAATTCTTCA
ATAAAACGTTCACCGCTAGACCTAATTCCCTCTTATATGAACAATTCATCGCTCAATTTA
AATGGTTATGCCGACGACGATCCGATATTCTGTCGATGTGGATTTAGTGCTGTTATAAAT
CGAAGACTTGCTCATCAAACGGGCCTGTTTTATGAAGATGAAATGGAAATTACCGGCATG
GCCAAAGATCCATCAAATTACAAAAAGAAATCTCTTGTAACACTCTTTACAAAACGCGAG
AGAATGAAAAGTTTGCAAAATTTAGAAAATGAAACTAAACCGAAAATTGGCGAAGACGGA
ACGATTATAGAGAATGACAAGGACTCATCTCAAGACTTATATTTTCCGAAGAAAGTTTCG
AAACTTTTTGATATCGTACGGGACCAATGTACAATCTTTCAAAATTCATCAGACACAATT
CAGCGTACAATTAAACATATGATTCAAGAACGATATTCACCACTCATTCCAAACAAGCAT
GTGAACATTCTTGAGTTTATTGATGCATTCGATATCGTTAGCTTGGCACTAGAGCAGAGT
AAATTTATATTCGAAAAATTCGATGGTTATAATAATCGACAAATGTATGTTCCTCAACAT
CAACAGAAACATATTGAGAAAAAGACTATCATAACGGAGAGCACTATAAGTGTACACAGA
TGGCCATTCTTAAATGCAGCTGGTCCGAAAAGCAATCAAGACATAATTCGAGTGATGAAA
TCGATGAAGGTACTTTTGCAGAAGGCGTTTAATCAAAATGGAACGACTGGCTTATGGGAT
GCTCCTTATGCTGTTCGAGGTCCGTTAACATGGAGAGAATTTCACCGGCTTGCTGGTCGT
GGTATAGGACAATGTGAACCACAACCTGTTCCTTCTTTAGTTGTCGGTCACGATAAAGAA
TGGCTTTGTATTTCTCCTTATGCTTTACAATTCTGGGATAAATTATTATTGGAACCATAT
TCATATCCGCGAGATATTGCCTATGTAATATTGACACCTGATAACGAATTTATCAATTCT
AAAGTAAAGACATTTTTCAAAGAATTGAGTACGACATATGAGATGTGTCGTCTTGGTAAA
CATCAACCTATTAAGGGATGGGAGGGTATTTTAAAGGTTAATAAGGCAATGTTAAATAAT
AAATTGGAATATCCAAATGATGAAGATGAATGGTTACATTCTATTGATACTAGCAGCAAG
CTCAATGAATTGATAAAAATGTATGCAGTCGCTTTGCAACAACATTTGGTGCCTTACTTG
TCAAAAATTCCTCAAGATAAGAGTCTACTGAATCCACCCGAGAGCTTTTACAATTATAAA
GATCACCATCATCATCAGAGATTCTCTGCATCACTTCCTAGTCCAATGCTACCACCTCAC
ACTCCTGAATCTAACACTTCACTCTCTACTTCTGGAAATCTCAATTCATGTGATACACCA
AAATCCGATCACGATATGGACTTGAAAGATTCACTTAATTCATCATCAATTAATGGTGAT
GTTATAAATCAGGATCAGCCATTAAATCCGCCACATATTGTACTTTATATTGTAGAACCA
TTTACATCTGGATCAGATTCAACCAATTTAGAGCGTTTAGCTTGTCTCTCATTACTTAAG
CTTTACTCGAATGTTCTCAACTCAATTCCTGAATCAGTAAAATCAAATGTAAGCATTCAA
ATAATTGCTCAAGAGAGTATTACAGAACTTGGACGAGACAGAAATATTAATCGATGGAGC
GACCATATGCGTAATCTTGCTTTAAATGTTTTTACACGTTCGTACCGCTATTTGTCACAC
ACAAATAATGTTAAAAGCTTGACCGGTTTCGGTACAGCAGCTGTGACTGAAGCATTTTTA
AAGACTAAAGACGAAAGAAATATGATGCCATTGAGATTATATACACCACCGTATATTTTA
TCAACGAGACAGGCAAAGAGTGAAAATGCTGACAATTTTGGACAGTCATTGAATGAACAA
CAATGTACGAGTATAATGTACTGTTGCTATTGCTTATCTGAGGACCAAAGTATGCTTCTA
TCTGTAATCACAGATGAGCGTGGCGAATTTTTAGAAAATTGTGCAATCAACATTGACATT
CCAAATAGAAAGAGGCGAAGAAAGACTTCAGCCCGACGAATTGGCTTAAAGAAACTTATG
GATTTTATTCTTGGTGTAATGTCTCAAACAGTCAAATCATGGAGACTTGTGATTGGTCGC
ATAGGACGCATTGGGCATAGTGAATTGAAAGGTTGGTCGTGGTTATTGAGTAAGCCAAAT
TTAGTGAAAGCTTCAAAATACCTTAAGGACATTTGTAAGCAATGTTCAGTAATGTATACA
CAAACTGTGCCGAGTATTTGGAGTGCATGTCTTGTTACTTTAGAGCCAGATTCAAATTTT
CGTGTAATGCCAGATCAATTTACACCCGATGAGAGATTTAGTCAAAGGTCAACACAATCA
CCATTATCAACACCGCAGGATGTTACATGTACGCATATTCTTGTATTTCCAACAAGTGCT
ATTTCACAGTCATCACAAACAGCCTTTCAAGAGCAACATTTAGAAAATGCATTAGATTTT
GGAGAAGATTTGGGTATATTAGGTAGTATCGATGATACTGATGATGTTGAAGACGATATA
AATGGAATTCAACATTTATTTGATGAATGCTGGAATGATAGTGCTGTCGGAATACCTCAA
ACTTCTCCAACACGTGATCGCGGTAGTCCTATAAATATGGATGAAAATAAAAGTAGACAA
AGTCCTGGTTTAATGGCTGATACTCAATCAGGATCATCTCGAGCAATGCCAGATCAAGAA
GAGGTTGGACAACTTTTACAACAACCTCTAGCATTAGGCTACTTGGTTTCAACAGCACCC
ACTGGACGAATGCCCAATTGGTTCTGGGCTTCTTGTCCTCATTTAGAAAATGTTTGTCCA
GTTTTTCTAAAAACAGCTCTTCACATTCACTCACCGTCCATACATAAGGAAAATGACGAC
ATTTACTTTAAAGAACAGTCATCAAAAGTTGAACATCCACTTGATTCGAATACCACGGCC
GATGTACTAAGATATGTTTTAGAGGGCTATAATGTGCTTTCGTGGCTTGCAATGGATTCA
AATACTCATGATCGACTTTCATGTTTACCAATACATGTACAAATGTTGATGCAACTATAT
CATTTACATACAGCGCTAGCATAG

>g11494.t1 Gene=g11494 Length=2347
MTQNHQTNGASLEDCHTNFFALADLCGIKWKKLVLSERPHATADSDPLDDPVLKSYTKCL
AKDILCVWRRVSQHKNDLDQTGGLGLGMFDISQNMTVTHPPLSLTAAKELWIFWYGEEPD
LIDLVSPELLKSSDLGEQGSWESGLSYECRSLLFKALHNLIERCLLSREIIRLGKWFVQP
VNNEDENSTAHLSFSFAFFVHGDSTVCASMDIREHPPVRHLTEDDLNNVIKSLDQNDDSC
SLDGTEQKDEININNKANMQSVILAPFGLSAVLSNTKNENVDQYAEKIINDWNTFYPMKK
LDNDTSSSKLPQLVEVISGGVKMLYPSKYVLITKLDVENKIDKCTNENKKCLDINRKCKT
NKIETDCMEQSFSDGIQKTVSGVLPERVWQDVIMNPAYTSKSSSTDKTNNFIDVSLTSSK
AEGERNNSVGSLWNFVEPCLKNSCACKRSGKSQSTGNSSLGKSSIRSYSNRTRTPFHKRS
ESSTSKLIDGSANESAIAAKKYNIRSADKNVSASTSGGGNSSEAQQMSIGSVGTASPMQH
NSQPSSIQVNEQNAISPTQQNDASSHPSTPIIENNNDQKSEIENFKTSQEQNKSENSQQN
SSHGGNDSSKSSKNIESKENQRLKRPSLMIRDCENNADEDFSTSQSLYDYSTWDAWMNHP
IKRFKSDDSDHQSKFNNRSKVLEYDLYANQNQTESSNLPFSMQNNFIAQNSNDKRNNWKS
CEEQKNPNNLNFIKETKIEHETDKLSAENLFTSEGLQPSYADLNKIFDNSDDNSNDDHLV
DNTPPGSNKSIGCHPDLELSEHEIKRDKMTFGNFNSLTNINQTTTLHNVNSSSINALGLI
RNEELSKMFPTPPSIEQHTNSSPGGICGNITDNLMETIDTAISHKMSDSYPNFGSPVEEP
IDDWSYVFIPPKMANIIGSSKYAPLNNLLSQTQPPIILPNDSIYKPSWVKQREQEEMRRN
QKDNTSNKIEPVATIKRDVVSSTTKPPIVMDIKKEIKTEPMSPINNSNKPNLMMANNRNI
KTNDSSNTIINKLLSSKGPSISSNMYLNHNRMSIHSPLQSPSTFQQQHFNSNNNNANVMG
SDGMFRKTLGMQQPPPPYDVAIHSPSLNSNMSNTNSEDVINNNNGNNKRISNLKGGMTMQ
RQTYSQNIAEANSLLVNVLLYDTSLNIFRDHNFDSCTICVCNATPKCVGNIRGLDSGMYL
SLATNCHFHLNNDISDVIEKTFEPKTNVQIHQQFEQFDSKYMGNNYNLVNIFSNESPCSV
PNTNASSIVSKYSNVVTNSSIKRSPLDLIPSYMNNSSLNLNGYADDDPIFCRCGFSAVIN
RRLAHQTGLFYEDEMEITGMAKDPSNYKKKSLVTLFTKRERMKSLQNLENETKPKIGEDG
TIIENDKDSSQDLYFPKKVSKLFDIVRDQCTIFQNSSDTIQRTIKHMIQERYSPLIPNKH
VNILEFIDAFDIVSLALEQSKFIFEKFDGYNNRQMYVPQHQQKHIEKKTIITESTISVHR
WPFLNAAGPKSNQDIIRVMKSMKVLLQKAFNQNGTTGLWDAPYAVRGPLTWREFHRLAGR
GIGQCEPQPVPSLVVGHDKEWLCISPYALQFWDKLLLEPYSYPRDIAYVILTPDNEFINS
KVKTFFKELSTTYEMCRLGKHQPIKGWEGILKVNKAMLNNKLEYPNDEDEWLHSIDTSSK
LNELIKMYAVALQQHLVPYLSKIPQDKSLLNPPESFYNYKDHHHHQRFSASLPSPMLPPH
TPESNTSLSTSGNLNSCDTPKSDHDMDLKDSLNSSSINGDVINQDQPLNPPHIVLYIVEP
FTSGSDSTNLERLACLSLLKLYSNVLNSIPESVKSNVSIQIIAQESITELGRDRNINRWS
DHMRNLALNVFTRSYRYLSHTNNVKSLTGFGTAAVTEAFLKTKDERNMMPLRLYTPPYIL
STRQAKSENADNFGQSLNEQQCTSIMYCCYCLSEDQSMLLSVITDERGEFLENCAINIDI
PNRKRRRKTSARRIGLKKLMDFILGVMSQTVKSWRLVIGRIGRIGHSELKGWSWLLSKPN
LVKASKYLKDICKQCSVMYTQTVPSIWSACLVTLEPDSNFRVMPDQFTPDERFSQRSTQS
PLSTPQDVTCTHILVFPTSAISQSSQTAFQEQHLENALDFGEDLGILGSIDDTDDVEDDI
NGIQHLFDECWNDSAVGIPQTSPTRDRGSPINMDENKSRQSPGLMADTQSGSSRAMPDQE
EVGQLLQQPLALGYLVSTAPTGRMPNWFWASCPHLENVCPVFLKTALHIHSPSIHKENDD
IYFKEQSSKVEHPLDSNTTADVLRYVLEGYNVLSWLAMDSNTHDRLSCLPIHVQMLMQLY
HLHTALA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g11494.t1 Coils Coil Coil 2346 2347 -
9 g11494.t1 MobiDBLite mobidb-lite consensus disorder prediction 451 489 -
10 g11494.t1 MobiDBLite mobidb-lite consensus disorder prediction 451 471 -
6 g11494.t1 MobiDBLite mobidb-lite consensus disorder prediction 508 630 -
8 g11494.t1 MobiDBLite mobidb-lite consensus disorder prediction 508 578 -
7 g11494.t1 MobiDBLite mobidb-lite consensus disorder prediction 589 611 -
11 g11494.t1 MobiDBLite mobidb-lite consensus disorder prediction 612 630 -
5 g11494.t1 MobiDBLite mobidb-lite consensus disorder prediction 2180 2217 -
12 g11494.t1 MobiDBLite mobidb-lite consensus disorder prediction 2180 2222 -
3 g11494.t1 PANTHER PTHR10791:SF181 MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13 16 2346 0.0
4 g11494.t1 PANTHER PTHR10791 RAG1-ACTIVATING PROTEIN 1 16 2346 0.0
1 g11494.t1 Pfam PF18296 MID domain of medPIWI 1604 1875 1.8E-55
2 g11494.t1 Pfam PF06333 Mediator complex subunit 13 C-terminal domain 1914 2336 5.8E-108

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0016592 mediator complex CC
GO:0003712 transcription coregulator activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values