General information for g115.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acyl-CoA Delta(11) desaturase.
Parent gene
- The parent gene g115 is located on chr_3: 998511..1001365 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g115 | g115.t4 | TTS | g115.t4 | 996357 | 996357 |
| chr_3 | g115 | g115.t4 | isoform | g115.t4 | 996419 | 997010 |
| chr_3 | g115 | g115.t4 | exon | g115.t4.exon1 | 996419 | 996694 |
| chr_3 | g115 | g115.t4 | cds | g115.t4.CDS1 | 996419 | 996694 |
| chr_3 | g115 | g115.t4 | exon | g115.t4.exon2 | 996752 | 997010 |
| chr_3 | g115 | g115.t4 | cds | g115.t4.CDS2 | 996752 | 996850 |
| chr_3 | g115 | g115.t4 | TSS | g115.t4 | NA | NA |
Sequences
>g115.t4 Gene=g115 Length=535
ATATTATCCACCATTATTTGCTCTTCTAGTCATATTTTTTCCTACAATCGTGCCTTATTA
TTTTTGGAATGAAGACTTGTGGATTTCTTTTTGGACAGCTTTTGTTTGTCGTTTTGTAAC
TGTCTTAAATATTGCATTTTTTGTGAATAGCGTTGCACACATGTATGGAACAAAACCATA
TGATAAGAAAATTATGCCAGTAGAAAATTTAGCAGTTGCAATAACAGCAATGGGTGAAGG
TTGGCACAATTATCATCATGTCTTTCCCTATGATTATAAAACTGGTGAATTTGGTGGATG
GCAAGGATATAAATTTAATATCACAACAGCTCACATTGACTTTTTTGCTAAAATTGGCTG
GGCTTATGATCGAAAATATGCAAGTGCTGAAATGATTGCAAGAAAAGTTGCAAAATCAGG
CGATGGAAGTCATTTTTTATCACATGAAGAAGCACACAAAACTTCAATTTATGGTTATGG
TGATAAAGATCTTGAAATTGAAGATGCTAAAGCATTAGAAAATTTAAAAGAATGA
>g115.t4 Gene=g115 Length=124
MYGTKPYDKKIMPVENLAVAITAMGEGWHNYHHVFPYDYKTGEFGGWQGYKFNITTAHID
FFAKIGWAYDRKYASAEMIARKVAKSGDGSHFLSHEEAHKTSIYGYGDKDLEIEDAKALE
NLKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g115.t4 | Coils | Coil | Coil | 109 | 124 | - |
| 1 | g115.t4 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 1 | 122 | 6.1E-53 |
| 2 | g115.t4 | PANTHER | PTHR11351:SF61 | RH14937P | 1 | 122 | 6.1E-53 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
