General information for g11507.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Maternal protein pumilio.
Parent gene
- The parent gene g11507 is located on chr_1: 16701616..16702486 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11507 | g11507.t2 | TSS | g11507.t2 | 16688809 | 16688809 |
| chr_1 | g11507 | g11507.t2 | isoform | g11507.t2 | 16689819 | 16691642 |
| chr_1 | g11507 | g11507.t2 | exon | g11507.t2.exon1 | 16689819 | 16690001 |
| chr_1 | g11507 | g11507.t2 | cds | g11507.t2.CDS1 | 16689819 | 16690001 |
| chr_1 | g11507 | g11507.t2 | exon | g11507.t2.exon2 | 16690092 | 16690502 |
| chr_1 | g11507 | g11507.t2 | cds | g11507.t2.CDS2 | 16690092 | 16690502 |
| chr_1 | g11507 | g11507.t2 | exon | g11507.t2.exon3 | 16690569 | 16690786 |
| chr_1 | g11507 | g11507.t2 | cds | g11507.t2.CDS3 | 16690569 | 16690786 |
| chr_1 | g11507 | g11507.t2 | exon | g11507.t2.exon4 | 16690845 | 16690968 |
| chr_1 | g11507 | g11507.t2 | cds | g11507.t2.CDS4 | 16690845 | 16690968 |
| chr_1 | g11507 | g11507.t2 | exon | g11507.t2.exon5 | 16691035 | 16691144 |
| chr_1 | g11507 | g11507.t2 | cds | g11507.t2.CDS5 | 16691035 | 16691144 |
| chr_1 | g11507 | g11507.t2 | exon | g11507.t2.exon6 | 16691207 | 16691444 |
| chr_1 | g11507 | g11507.t2 | cds | g11507.t2.CDS6 | 16691207 | 16691444 |
| chr_1 | g11507 | g11507.t2 | exon | g11507.t2.exon7 | 16691541 | 16691642 |
| chr_1 | g11507 | g11507.t2 | cds | g11507.t2.CDS7 | 16691541 | 16691642 |
| chr_1 | g11507 | g11507.t2 | TTS | g11507.t2 | NA | NA |
Sequences
>g11507.t2 Gene=g11507 Length=1386
ATGAAGTTGCTAGGAGGTTCTAACGATGAAAATGCCGAATCCGGTAATCGTCCACCAATC
AGAACTTCCGATGATGCTGCAACCGCAGCTGCTGTTGCTTATGGTTTTCATCCTCAAGAA
AATGAATTTCCTCCTGCAGCATTTGTACCGAAAAGATGGGCTGGAACTGATGATTTAGTA
GAGAATCCTGAAAAATGGAAGTATTCTTCAATTTATCAACCAGCATTGCAACAACAACAA
CAGCAACCATTTAGCAGTCAAAATCAGCAAAATGCAATTAAGCCTCCTCCACCAACGATG
CTAAATCATCCTTCTCAAATTCCAAATGCAATTCAATCAAATGCTCATATGAATCCAACA
ACAATGTTAAACCAAACTATAAATATGAACAATACTAATACCTTAGCTCCTCATCATCAA
CATGGCATGCATCCTTCAATGTACGATCATATGTTGAATCCAATGAATATGAATGGGATA
CAAAAGGGTCCATCAGAATTTATATATTTGAATCAACAACATGCTGCTCCTCCACCACAT
CATAATATGAGTCAGTTGGCAGCACAAAATCAATATTTACCATCTCGTAATAACCTTGCT
TCTTCAGCAACTAAAAAATTATGGGATAACAAAAATGACATGAAAAACACTGGATCTTTA
CAATTGGCACCTTTACAGATGCCTGGTAATGAACATCAAATTTGGCCAAAAGATACACAA
GGTGTTTGGTCGAAAGAACAACAAATGTGGTCTAATCAAGATAATAGTGGTCTTATTCCG
AGAAGAAATGACGTTATGACAGGAATATTAAGTCCGCGTGATTCTACTGGTGGACTTGGA
GTTAAAATGGTTGAATATGTTCTCGGAGGATCGCCAACAAATAAGGAAAGTCCATTAGAT
GCTCGTTTGAGAAATTTAAAGATTGACGAAGTTAAGGGTAACGATGATAAAGAAAGTTCA
TCACCATTTGAAACTAACGGATTGAAAAAAGACGATTCGACTTCTAATGGGACAGCTAAT
GGTATTGATGACGATAAAGGTTTTAATCGCACTCCTGGCTCACGTCAACCATCGCCAGCA
GAGGAGCATTTAGCTAGAAATGCATTTGGTTTAGAACAAAGTATTAACGTCAATAACTTT
TCTCAACCTTTGATGCAACACATGTTGACTGGACATAATCATCATGACCAACAGCAGCAG
CAACAGCAACAACAAATGAGTTCAGCTTTTCATCCTCAACATGCAATTGGTCATCACGTT
TTGAATGGCGGAATGCCAGTTCAGAATCCAATGGTTACTCAAGGTCAAAATCATATTGAT
TCTTCAAACATGCTTCAGCAACAACAACAGCAGCAACAGCAACAACATGGTTATGAGGTG
AGTTAA
>g11507.t2 Gene=g11507 Length=461
MKLLGGSNDENAESGNRPPIRTSDDAATAAAVAYGFHPQENEFPPAAFVPKRWAGTDDLV
ENPEKWKYSSIYQPALQQQQQQPFSSQNQQNAIKPPPPTMLNHPSQIPNAIQSNAHMNPT
TMLNQTINMNNTNTLAPHHQHGMHPSMYDHMLNPMNMNGIQKGPSEFIYLNQQHAAPPPH
HNMSQLAAQNQYLPSRNNLASSATKKLWDNKNDMKNTGSLQLAPLQMPGNEHQIWPKDTQ
GVWSKEQQMWSNQDNSGLIPRRNDVMTGILSPRDSTGGLGVKMVEYVLGGSPTNKESPLD
ARLRNLKIDEVKGNDDKESSSPFETNGLKKDDSTSNGTANGIDDDKGFNRTPGSRQPSPA
EEHLARNAFGLEQSINVNNFSQPLMQHMLTGHNHHDQQQQQQQQQMSSAFHPQHAIGHHV
LNGGMPVQNPMVTQGQNHIDSSNMLQQQQQQQQQQHGYEVS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11507.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
| 2 | g11507.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 361 | - |
| 6 | g11507.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 325 | - |
| 1 | g11507.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 342 | - |
| 5 | g11507.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 411 | - |
| 3 | g11507.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 461 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
