General information for g11507.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11507 is located on chr_1: 16701616..16702486 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11507 | g11507.t4 | TSS | g11507.t4 | 16688809 | 16688809 |
| chr_1 | g11507 | g11507.t4 | isoform | g11507.t4 | 16688811 | 16690491 |
| chr_1 | g11507 | g11507.t4 | exon | g11507.t4.exon1 | 16688811 | 16689119 |
| chr_1 | g11507 | g11507.t4 | exon | g11507.t4.exon2 | 16689741 | 16690001 |
| chr_1 | g11507 | g11507.t4 | cds | g11507.t4.CDS1 | 16689819 | 16690001 |
| chr_1 | g11507 | g11507.t4 | exon | g11507.t4.exon3 | 16690092 | 16690491 |
| chr_1 | g11507 | g11507.t4 | cds | g11507.t4.CDS2 | 16690092 | 16690490 |
| chr_1 | g11507 | g11507.t4 | TTS | g11507.t4 | NA | NA |
Sequences
>g11507.t4 Gene=g11507 Length=970
GTGTGTAAATAAAATAAAATTTGGTGTAAATAAAATTTCTCATTTTGACTGATTTTCATT
TGTTTTTCAAGATTAAATATAATATAATCAATCAATTTTAACTCTTTATTCGATCGACTA
TCGAAAATATTTAAATTTAAAGCTTCTACAGAGTGTAAACGCAAGAAAATTGAATTTTTC
TTTTTGAGTAAAGAAGATTCTCTCTCTCTATCCGCAATTTTTCTTCGCGTTCTTTATAGT
TTTTTAATTTTTATTCTTATGAAAAACTTTATTATAATCATAATTTAGACTCTCTAAACT
CTATTTAAGCAAAAAACAATTTTATTCGCCAACGACTTTAAAACGCATTGAGAAGACGTA
GCTAAAGAGTGTAAAAAGAGTTGCGGAATGAAGTTGCTAGGAGGTTCTAACGATGAAAAT
GCCGAATCCGGTAATCGTCCACCAATCAGAACTTCCGATGATGCTGCAACCGCAGCTGCT
GTTGCTTATGGTTTTCATCCTCAAGAAAATGAATTTCCTCCTGCAGCATTTGTACCGAAA
AGATGGGCTGGAACTGATGATTTAGTAGAGAATCCTGAAAAATGGAAGTATTCTTCAATT
TATCAACCAGCATTGCAACAACAACAACAGCAACCATTTAGCAGTCAAAATCAGCAAAAT
GCAATTAAGCCTCCTCCACCAACGATGCTAAATCATCCTTCTCAAATTCCAAATGCAATT
CAATCAAATGCTCATATGAATCCAACAACAATGTTAAACCAAACTATAAATATGAACAAT
ACTAATACCTTAGCTCCTCATCATCAACATGGCATGCATCCTTCAATGTACGATCATATG
TTGAATCCAATGAATATGAATGGGATACAAAAGGGTCCATCAGAATTTATATATTTGAAT
CAACAACATGCTGCTCCTCCACCACATCATAATATGAGTCAGTTGGCAGCACAAAATCAA
TATTTACCAT
>g11507.t4 Gene=g11507 Length=194
MKLLGGSNDENAESGNRPPIRTSDDAATAAAVAYGFHPQENEFPPAAFVPKRWAGTDDLV
ENPEKWKYSSIYQPALQQQQQQPFSSQNQQNAIKPPPPTMLNHPSQIPNAIQSNAHMNPT
TMLNQTINMNNTNTLAPHHQHGMHPSMYDHMLNPMNMNGIQKGPSEFIYLNQQHAAPPPH
HNMSQLAAQNQYLP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g11507.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
