General information for g11510.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11510 is located on chr_1: 16715131..16722700 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11510 | g11510.t5 | TTS | g11510.t5 | 16713939 | 16713939 |
| chr_1 | g11510 | g11510.t5 | isoform | g11510.t5 | 16714384 | 16716178 |
| chr_1 | g11510 | g11510.t5 | exon | g11510.t5.exon1 | 16714384 | 16715272 |
| chr_1 | g11510 | g11510.t5 | cds | g11510.t5.CDS1 | 16714385 | 16715131 |
| chr_1 | g11510 | g11510.t5 | exon | g11510.t5.exon2 | 16716025 | 16716178 |
| chr_1 | g11510 | g11510.t5 | TSS | g11510.t5 | 16716189 | 16716189 |
Sequences
>g11510.t5 Gene=g11510 Length=1043
AATCGTGGTAAATTAAAATTGCTAAAAGCAGTGTCTACCTTAAATTTAAAAATTTTTTGG
TTGAATTTTATAAAAATTTAAAAAAGGCAGTACATGAGGAGCCTAAAAAGAACAAATTCT
ATGTTATTGAACCGGAGTTGATCAATTAGAAAAAACAATTTTGTGTCAACATGATGACTT
GAAAAGGTGGAGCGACTTATGCTCGCAAAAATTATTATTGAAAAATATACATCACACTTA
ATCTTTTCAAAAAATTTCAATCCAATACCATCAGTCAATAAAACATAAAATCAAAATGGA
TCAAAGTTCTTCTGAGGAGCTTAGTCACACTTTTGAAATAATCGACAAGAAAGAGCTCTT
GATGACATCTACTGAAAACGATAGTGATAGCCTGAACAACAATAACAACATAAACACCGA
CTGTGACACAAACATAAACGATCAAATGACTACGACGATAATTGCAGCTGATAAAATATC
CGAAAAGAATACAGACGATGATAATGGCAACAATAATACTGATAATTCAAACAGTAAAAA
GTATACTAGAGATCAATTGATTCAAATGAAGCAGATAGCTTCAACAATGCTACCGGATTT
AAAGCGTGAAGTGAAAAATCTTATTTTTACTGAAACTTCTGCACTTGACAATACACTCAA
TCGAAAAATTAGAGCTGATGCTGTAATACCAAACTTTATGCCTCTTCCTGGTCGTAACTC
AGCACAGCGACCAAAATCTGAATATGCCGGTAATAGAAAATCACAGCAGGGTAATAAAGG
CCAAATAATCACTATGAGATTGACATCAAATGAAGAAGTTAAATTAAATGAAGCTAAAAA
TGCATGGAAACCATCAACTTTAGCACAAGAAGAAGTTGTGTTATCAGAGGAAGAAAAGAA
AACTGAAGAATTGAAAAAACAATTCCGTGGAATATTAAACAAACTTTCGCCTGATAATTT
CCTTACACTTGTAGGAAAGCTTAAAACATTGCAAATAGATACAGTAGATCGATTAGACGA
ATGTATATCATTAGTGTTTGAAA
>g11510.t5 Gene=g11510 Length=249
MDQSSSEELSHTFEIIDKKELLMTSTENDSDSLNNNNNINTDCDTNINDQMTTTIIAADK
ISEKNTDDDNGNNNTDNSNSKKYTRDQLIQMKQIASTMLPDLKREVKNLIFTETSALDNT
LNRKIRADAVIPNFMPLPGRNSAQRPKSEYAGNRKSQQGNKGQIITMRLTSNEEVKLNEA
KNAWKPSTLAQEEVVLSEEEKKTEELKKQFRGILNKLSPDNFLTLVGKLKTLQIDTVDRL
DECISLVFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g11510.t5 | Coils | Coil | Coil | 189 | 216 | - |
| 8 | g11510.t5 | Gene3D | G3DSA:1.25.40.180 | - | 196 | 249 | 3.5E-10 |
| 7 | g11510.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 85 | - |
| 6 | g11510.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 85 | - |
| 4 | g11510.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 163 | - |
| 5 | g11510.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 163 | - |
| 1 | g11510.t5 | PANTHER | PTHR23253:SF63 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4G1, ISOFORM B-RELATED | 26 | 249 | 1.2E-19 |
| 2 | g11510.t5 | PANTHER | PTHR23253 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 26 | 249 | 1.2E-19 |
| 3 | g11510.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 199 | 249 | 1.5E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
