General information for g11515.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11515 is located on chr_1: 16751264..16752191 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11515 | g11515.t2 | isoform | g11515.t2 | 16748226 | 16749840 |
| chr_1 | g11515 | g11515.t2 | exon | g11515.t2.exon1 | 16748226 | 16749840 |
| chr_1 | g11515 | g11515.t2 | cds | g11515.t2.CDS1 | 16748605 | 16749840 |
| chr_1 | g11515 | g11515.t2 | TSS | g11515.t2 | NA | NA |
| chr_1 | g11515 | g11515.t2 | TTS | g11515.t2 | NA | NA |
Sequences
>g11515.t2 Gene=g11515 Length=1615
AGTTTTGAATACAATAAAACCTGAATTTATTAATGATAAAAATGAAAATTTTCCAAAGAT
TGATAGTAAATTGGAATTGTTTAAACTACCACCACCTATTGAGAAAAAAATTTTCAAACC
ATTTGATTTAACCGAAGACGATGCAAATGATACATGCTCAACAGTACAATTTAATTTATT
TATAAAGCAACAGTCTGTTAGTACTCCAATATCAAAGAAATCTGTTCCAAAATTAGTTCC
ACTAGCTAATCAAGAATCTTCTACTTCACAAGCTAATGCTTTTACAATTTACACGGATGA
TCATAAAAACGAAGATGTTAGTGATAAAAATGAAATTCAAGAGCAAGGTTCAGAAAATAC
CGGCGTATGTGCGTCAATAATGCAAACAAATGTATTACAACCAAAACTTTCAACAATTAT
GGAAGTTACTGAAACAACACAATCTACAAAATCAAATGTAAGCTCGATTAATGATGCTGA
AAGTCAAGCTTTAAAATCACAATTAAAGAACACTCCGCCTGAATCTGACAAACATTTTAA
TAATTTGAGTGTATTTCGTATACCTGAAGATCAAACAGAAACAATTCCGTTTAATATATT
AAAATTAGCACAAATTCCAAAAACACCTGGACGTTTTCTATGTTTGGAAGAAAGTGATGT
GAAACAAAAGCAGCAATTAAATGATGATAAACAACAACAATCATTTATGACAATACCAAA
ATTTGAATTCTCTTTCACAGGTGGTGGTGATATGTCAATCAATAATTTTTCTATTATGAA
ACCATCTCTAATCACACAAGAGAAAAAAGAACTTTCTTATGTGGAAATCCCAGCAACGCA
AGAATGCACTATTGAAAACGAAAAATCACATCTAACAGCCCCGATAACACAAGAAATTTT
AGAAAAGAAACAAAACTTGGAAATAGAAACAGCTACTCCTCAACCAATATCAGAAAAAAA
CACAATTGAAAATGTTGAACAAAATAATGTTAAAGAACTAACCATTTCACATGTTGAGAT
ATCTGCAACACAAACTGAATTATTGCATACTGAGCTCCCAAACGCCCAAGATTCGAATAA
ATTGGTTGAGGAACAACAAGGTTTCAAATTTGATATTTATGAAGATACAACAGCTTGTAA
TGCTATTCCGCTCGTTCGTATTCAACCGCAAAATATTAAACTTGATGAAACAAATAATTT
TCATGCCTCGAGAAAAGAAAATTATGTCGATAGTATGCTCAAACGAAATGTTTCTGATGA
ATTTTTAAACCTCTGCTCAAAATCTCCAGCTTTAACTAAAACAATTAATTGCCCAGATAA
AGAAGTTAGTGATCTGCTCAAGTTTTCTGACATAAAAACAAATAAGACTCTTGAAAATAG
TTTTCAAACACTTGCTATAGAACATGCTGTTAAAAGTGCATCACCCACAATGAACATATT
TGAAGAAGATCTTAACACACAGAAATTTAGCTCACTCTTGACAACTGATAAGAATTCAAC
TATCATAGATTCGATTTCTCAAAAGCAGCAAATTAGTGAATCAAAAAGTGCAAAAAAACC
TCTGGACATTAGCATTGAAATGGACGAAACAGAAACTTCACGACTTAATATAGAG
>g11515.t2 Gene=g11515 Length=412
MQTNVLQPKLSTIMEVTETTQSTKSNVSSINDAESQALKSQLKNTPPESDKHFNNLSVFR
IPEDQTETIPFNILKLAQIPKTPGRFLCLEESDVKQKQQLNDDKQQQSFMTIPKFEFSFT
GGGDMSINNFSIMKPSLITQEKKELSYVEIPATQECTIENEKSHLTAPITQEILEKKQNL
EIETATPQPISEKNTIENVEQNNVKELTISHVEISATQTELLHTELPNAQDSNKLVEEQQ
GFKFDIYEDTTACNAIPLVRIQPQNIKLDETNNFHASRKENYVDSMLKRNVSDEFLNLCS
KSPALTKTINCPDKEVSDLLKFSDIKTNKTLENSFQTLAIEHAVKSASPTMNIFEEDLNT
QKFSSLLTTDKNSTIIDSISQKQQISESKSAKKPLDISIEMDETETSRLNIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11515.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 412 | - |
| 1 | g11515.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 412 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
