Gene loci information

Transcript annotation

  • This transcript has been annotated as Ecdysone 20-monooxygenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11529 g11529.t4 isoform g11529.t4 16873952 16878545
chr_1 g11529 g11529.t4 exon g11529.t4.exon1 16873952 16874086
chr_1 g11529 g11529.t4 TSS g11529.t4 16873955 16873955
chr_1 g11529 g11529.t4 exon g11529.t4.exon2 16876464 16876719
chr_1 g11529 g11529.t4 cds g11529.t4.CDS1 16876482 16876719
chr_1 g11529 g11529.t4 exon g11529.t4.exon3 16876785 16876895
chr_1 g11529 g11529.t4 cds g11529.t4.CDS2 16876785 16876895
chr_1 g11529 g11529.t4 exon g11529.t4.exon4 16876954 16877014
chr_1 g11529 g11529.t4 cds g11529.t4.CDS3 16876954 16877014
chr_1 g11529 g11529.t4 exon g11529.t4.exon5 16877144 16877367
chr_1 g11529 g11529.t4 cds g11529.t4.CDS4 16877144 16877367
chr_1 g11529 g11529.t4 exon g11529.t4.exon6 16877417 16877626
chr_1 g11529 g11529.t4 cds g11529.t4.CDS5 16877417 16877626
chr_1 g11529 g11529.t4 exon g11529.t4.exon7 16877692 16877873
chr_1 g11529 g11529.t4 cds g11529.t4.CDS6 16877692 16877873
chr_1 g11529 g11529.t4 exon g11529.t4.exon8 16877936 16878013
chr_1 g11529 g11529.t4 cds g11529.t4.CDS7 16877936 16878013
chr_1 g11529 g11529.t4 exon g11529.t4.exon9 16878074 16878231
chr_1 g11529 g11529.t4 cds g11529.t4.CDS8 16878074 16878231
chr_1 g11529 g11529.t4 exon g11529.t4.exon10 16878380 16878545
chr_1 g11529 g11529.t4 cds g11529.t4.CDS9 16878380 16878545
chr_1 g11529 g11529.t4 TTS g11529.t4 16878795 16878795

Sequences

>g11529.t4 Gene=g11529 Length=1581
GTTTAGTCGATTCTTCCACCAGAACTTGAACGGTCAAGTTGCGAGAGACTCGCTAAATAA
ATTCTACATTAACCGCTGCCTAACTGTAAATTAATCCTAAAAATAAAAAATTAAATTGTG
ACATCAGAATCTTGGCAATTATTGTGATAAAAAATGGTGCCTTTAACCGTGATATTGTTG
TATGTTGCCATTGCATCGTTTCTAATCTACACATTCAAAAATAAGAAACCATTGAAATGG
AGTGAAATTGCCAATGCTATACCGTTTTACCAATACATTGTCAAAATCGACAGTGAAGAT
ACGTTTAAAATTCCTGGACCACTACGTCTTCCTTTCATTGGTACAAAATGGCAAAATATC
AAAATGAACAAACTACATGAATACTATGAAAGCCTGAACAACCTTTATGGAGATGTAGTA
TTGGAAGTATGCAGTAATAATGTTCCTGTGATTTCATTATTCAATAAAAATGACATTGAA
AAGGTTCTGCATTTCAATTCAGCTTATCCATTTCGTCCACCAACGGAAATTCTTTCTTAT
TATCGTAAAAGTCGACCCGATAGTGATGAATTTATAAATGTGATAAAACTTAAACGAAAT
GAAGAAAATATTGTAAAAAATTTTGAAGAAACCATGAAATTGATGTCAATAGAGGCTGCA
TGTGCATTAATTTTGGGAAGAAAGATGGGTTATTTAGCTGATAGCCATGATCATTTGGAT
AATAATTCAAAGGAGCTAATGATAGCTGTTAAAAATATTTTCGGAGTTATTCGTGATTCA
TATTATGGTAATGGGATGTGGAAATATTTTCCAACGAAACTTTACAGTAAATACATTGAA
TATGAAGACAAAATTTATGATATAATTACGGGAATAATAAATGAAACTTTGCATGACCAT
GAGTTTATGGCACTAGATAGTGATAATATGAGCATTCTAGCTATGATACTAAAAGCTGAT
GGACTCGATATGAAAGATAAAATAAGTGGTGTAATTGACTTTTTAACTGCAAGCCAAGTT
TTGTCACACACGATGATTTTTTTACTTCATTTTCTATCTGAAAAGCCAGAAGTTCAAGAA
AAAATTTATCAAGAGACATTGCCATACATTAAAACACTTTCGTACGAAAACATTAAAAAG
TTCCATTACACACGTGCTGCCATTCTCGAGAGTCTTAGAATTTCACCAACAGCATTTTCA
GTTGCAAGAATTTTAGAACAAGATTTTAATTTTTCGGGTTACCACGTAAAAGCTGGGAAT
ATTGTCCTCTTGCAAAATATGGTTGCGTGCAACAAAGATGAGAATTTCGAGAATGCCAAA
ACTTTCAATCCTGATAGATGGCTTAATGAAAATGGTGAATTCAATATAAACCAATGCTCT
GCGTCACCTATAGTTATACCATTTGGATATGGGAAACGGGCATGTCCAGGAAAAAAATTC
TCTGAAATGGAGATGACAATCTTAACAGTTAAACTCATTCACTCGTACAAAATAGAATAT
CATTCAACATTTGAGAAGCAATTTGAGTTCCTTGTAGTACCTAAAGATCCAGTTGACATA
AAATTTACAAATCGATTCTGA

>g11529.t4 Gene=g11529 Length=475
MVPLTVILLYVAIASFLIYTFKNKKPLKWSEIANAIPFYQYIVKIDSEDTFKIPGPLRLP
FIGTKWQNIKMNKLHEYYESLNNLYGDVVLEVCSNNVPVISLFNKNDIEKVLHFNSAYPF
RPPTEILSYYRKSRPDSDEFINVIKLKRNEENIVKNFEETMKLMSIEAACALILGRKMGY
LADSHDHLDNNSKELMIAVKNIFGVIRDSYYGNGMWKYFPTKLYSKYIEYEDKIYDIITG
IINETLHDHEFMALDSDNMSILAMILKADGLDMKDKISGVIDFLTASQVLSHTMIFLLHF
LSEKPEVQEKIYQETLPYIKTLSYENIKKFHYTRAAILESLRISPTAFSVARILEQDFNF
SGYHVKAGNIVLLQNMVACNKDENFENAKTFNPDRWLNENGEFNINQCSASPIVIPFGYG
KRACPGKKFSEMEMTILTVKLIHSYKIEYHSTFEKQFEFLVVPKDPVDIKFTNRF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g11529.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 48 474 1.6E-77
3 g11529.t4 PANTHER PTHR24305 CYTOCHROME P450 49 136 1.1E-130
5 g11529.t4 PANTHER PTHR24305:SF111 ECDYSONE 20-MONOOXYGENASE 49 136 1.1E-130
2 g11529.t4 PANTHER PTHR24305 CYTOCHROME P450 138 468 1.1E-130
4 g11529.t4 PANTHER PTHR24305:SF111 ECDYSONE 20-MONOOXYGENASE 138 468 1.1E-130
8 g11529.t4 PRINTS PR00463 E-class P450 group I signature 294 320 3.4E-10
13 g11529.t4 PRINTS PR00385 P450 superfamily signature 303 316 1.6E-8
11 g11529.t4 PRINTS PR00385 P450 superfamily signature 335 346 1.6E-8
7 g11529.t4 PRINTS PR00463 E-class P450 group I signature 374 398 3.4E-10
9 g11529.t4 PRINTS PR00463 E-class P450 group I signature 414 424 3.4E-10
12 g11529.t4 PRINTS PR00385 P450 superfamily signature 415 424 1.6E-8
6 g11529.t4 PRINTS PR00463 E-class P450 group I signature 424 447 3.4E-10
10 g11529.t4 PRINTS PR00385 P450 superfamily signature 424 435 1.6E-8
1 g11529.t4 Pfam PF00067 Cytochrome P450 137 471 6.8E-50
17 g11529.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
18 g11529.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 21 -
16 g11529.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 22 475 -
20 g11529.t4 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 417 426 -
14 g11529.t4 SUPERFAMILY SSF48264 Cytochrome P450 52 474 3.54E-62
19 g11529.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed