Gene loci information

Transcript annotation

  • This transcript has been annotated as Ecdysone 20-monooxygenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11529 g11529.t6 isoform g11529.t6 16877018 16878545
chr_1 g11529 g11529.t6 exon g11529.t6.exon1 16877018 16877367
chr_1 g11529 g11529.t6 cds g11529.t6.CDS1 16877076 16877367
chr_1 g11529 g11529.t6 exon g11529.t6.exon2 16877417 16877626
chr_1 g11529 g11529.t6 cds g11529.t6.CDS2 16877417 16877626
chr_1 g11529 g11529.t6 exon g11529.t6.exon3 16877692 16877873
chr_1 g11529 g11529.t6 cds g11529.t6.CDS3 16877692 16877873
chr_1 g11529 g11529.t6 exon g11529.t6.exon4 16877936 16878013
chr_1 g11529 g11529.t6 cds g11529.t6.CDS4 16877936 16878013
chr_1 g11529 g11529.t6 exon g11529.t6.exon5 16878074 16878231
chr_1 g11529 g11529.t6 cds g11529.t6.CDS5 16878074 16878231
chr_1 g11529 g11529.t6 exon g11529.t6.exon6 16878380 16878545
chr_1 g11529 g11529.t6 cds g11529.t6.CDS6 16878380 16878545
chr_1 g11529 g11529.t6 TTS g11529.t6 16878795 16878795
chr_1 g11529 g11529.t6 TSS g11529.t6 NA NA

Sequences

>g11529.t6 Gene=g11529 Length=1144
TGCTTCTTTGGGTTTAATTAACGAACAAGGACCGGAGTGGGGAAGATTAAGAGCAAAAAT
GACTCCAAAAACCTTAGAAAGTCGAAAAGTACTTTCTTCTTTCTGCTCTGACTTTAATGA
ACTTAGTGATGAATTTATAAATGTGATAAAACTTAAACGAAATGAAGAAAATATTGTAAA
AAATTTTGAAGAAACCATGAAATTGATGTCAATAGAGGCTGCATGTGCATTAATTTTGGG
AAGAAAGATGGGTTATTTAGCTGATAGCCATGATCATTTGGATAATAATTCAAAGGAGCT
AATGATAGCTGTTAAAAATATTTTCGGAGTTATTCGTGATTCATATTATGGTAATGGGAT
GTGGAAATATTTTCCAACGAAACTTTACAGTAAATACATTGAATATGAAGACAAAATTTA
TGATATAATTACGGGAATAATAAATGAAACTTTGCATGACCATGAGTTTATGGCACTAGA
TAGTGATAATATGAGCATTCTAGCTATGATACTAAAAGCTGATGGACTCGATATGAAAGA
TAAAATAAGTGGTGTAATTGACTTTTTAACTGCAAGCCAAGTTTTGTCACACACGATGAT
TTTTTTACTTCATTTTCTATCTGAAAAGCCAGAAGTTCAAGAAAAAATTTATCAAGAGAC
ATTGCCATACATTAAAACACTTTCGTACGAAAACATTAAAAAGTTCCATTACACACGTGC
TGCCATTCTCGAGAGTCTTAGAATTTCACCAACAGCATTTTCAGTTGCAAGAATTTTAGA
ACAAGATTTTAATTTTTCGGGTTACCACGTAAAAGCTGGGAATATTGTCCTCTTGCAAAA
TATGGTTGCGTGCAACAAAGATGAGAATTTCGAGAATGCCAAAACTTTCAATCCTGATAG
ATGGCTTAATGAAAATGGTGAATTCAATATAAACCAATGCTCTGCGTCACCTATAGTTAT
ACCATTTGGATATGGGAAACGGGCATGTCCAGGAAAAAAATTCTCTGAAATGGAGATGAC
AATCTTAACAGTTAAACTCATTCACTCGTACAAAATAGAATATCATTCAACATTTGAGAA
GCAATTTGAGTTCCTTGTAGTACCTAAAGATCCAGTTGACATAAAATTTACAAATCGATT
CTGA

>g11529.t6 Gene=g11529 Length=361
MTPKTLESRKVLSSFCSDFNELSDEFINVIKLKRNEENIVKNFEETMKLMSIEAACALIL
GRKMGYLADSHDHLDNNSKELMIAVKNIFGVIRDSYYGNGMWKYFPTKLYSKYIEYEDKI
YDIITGIINETLHDHEFMALDSDNMSILAMILKADGLDMKDKISGVIDFLTASQVLSHTM
IFLLHFLSEKPEVQEKIYQETLPYIKTLSYENIKKFHYTRAAILESLRISPTAFSVARIL
EQDFNFSGYHVKAGNIVLLQNMVACNKDENFENAKTFNPDRWLNENGEFNINQCSASPIV
IPFGYGKRACPGKKFSEMEMTILTVKLIHSYKIEYHSTFEKQFEFLVVPKDPVDIKFTNR
F

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11529.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 360 2.5E-69
2 g11529.t6 PANTHER PTHR24305 CYTOCHROME P450 6 354 4.0E-103
3 g11529.t6 PANTHER PTHR24305:SF111 ECDYSONE 20-MONOOXYGENASE 6 354 4.0E-103
7 g11529.t6 PRINTS PR00463 E-class P450 group I signature 180 206 1.3E-10
11 g11529.t6 PRINTS PR00385 P450 superfamily signature 189 202 6.4E-9
9 g11529.t6 PRINTS PR00385 P450 superfamily signature 221 232 6.4E-9
6 g11529.t6 PRINTS PR00463 E-class P450 group I signature 260 284 1.3E-10
5 g11529.t6 PRINTS PR00463 E-class P450 group I signature 300 310 1.3E-10
8 g11529.t6 PRINTS PR00385 P450 superfamily signature 301 310 6.4E-9
4 g11529.t6 PRINTS PR00463 E-class P450 group I signature 310 333 1.3E-10
10 g11529.t6 PRINTS PR00385 P450 superfamily signature 310 321 6.4E-9
1 g11529.t6 Pfam PF00067 Cytochrome P450 5 357 3.0E-51
13 g11529.t6 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 303 312 -
12 g11529.t6 SUPERFAMILY SSF48264 Cytochrome P450 8 360 6.29E-57

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed