General information for g11530.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Kinesin-II 85 kDa subunit.
Parent gene
- The parent gene g11530 is located on chr_1: 16878838..16881393 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11530 | g11530.t11 | isoform | g11530.t11 | 16878545 | 16879935 |
| chr_1 | g11530 | g11530.t11 | exon | g11530.t11.exon1 | 16878545 | 16879935 |
| chr_1 | g11530 | g11530.t11 | TTS | g11530.t11 | 16878585 | 16878585 |
| chr_1 | g11530 | g11530.t11 | cds | g11530.t11.CDS1 | 16878838 | 16879929 |
| chr_1 | g11530 | g11530.t11 | TSS | g11530.t11 | NA | NA |
Sequences
>g11530.t11 Gene=g11530 Length=1391
ACACTTATGTGTGCAACAATTTCGCCATCAGAGTCAAATTACGTTGAAACAATTTCAACA
TTGCGCTATGCTGGTCGTGCAAAGAGCATTCAAAATCATGCTCATATGAATTTCGATCCT
AAAGATGCTTTATTGAAGCATTTTCAACAAGAAATTGAAGAATTGAAACGTCAATTAGAA
GAAGGAGTTTTTGAGATAGGTGGTGATGAAATTGATGCAGATGAAAATGATGATTTAAGC
GAAGAATCAGATATTGAGATAGAAAATGAGAAAGAAAAGAGTAAAGAAAAAAGCAAAAAG
AAAAAGGCTAAAGCAAATAAAGACGAAATGCACAAAGAAAAATCTGACGCAGAAAAAGAA
TTACTTGAGCTCAAAGCACAAGAACATGAAAAAGCGTTAAAGGTAGCACAGTCAGAGCAA
GATATAATTAGAGCCAAACTTCAATCTCTTGAAAATAAAATTTTAAATGGTGGTGAGAAT
TTGTTAGAGAAAGCAAACCAACAGGAGCAACTTTTGGAAAAATCAATCGCAGAACTTGAA
GCCACAAATAAGAAAGAACAAGAACTACAACAAACACTTCAGAAAATTGAGGCTGAACGA
ATTGACATTGAAGAACGATATTCTTCGCTTCAAGAAGAATGTGTTGGAAAGACTAAGAAA
TTACAGAAAGTTATGCAAATGCTTATGGGTTTGAAATCAGAATTAGCTGATCAACAGCAA
GAACAGCAACGTGAAAAAGAGGGAATTTATGAAAATATTCGTAGTTTGTCAAGAGAACTT
GCTCTTTGTGAACTTGTTATTAACAATTATATACCGAAAGAATATCAAACATTGATTGAC
AAGTTCACTTACTGGAACGAAGAGATTGGCGAGTGGCAATTGAAATGTGTTGCATATACC
GGTAACAATATGCGCAAAAACATTAATGAACAACAGAAAAATGCTAAAGAAGAAAAAGAA
TATGTTGATTTGAGCCATGTCTATTTAAGTTACAATGTTGACGGATTAACTGAGCCGGTT
CGCGGAAAAACATCTCGACCTAAAACATCACATTCTGGTGTACCACGCTATTACCAAAGA
ATTAATAATATAAATTAGATCAAAATTTAAGTCACAATGATACAACCTTTGTTTAATTAA
CTAAGAAATAAATTTATTTTGCAATAATTTCGTGATAGATTTATAAAAAATCATTAACAG
TCGATTTATAACTCACAGCTATGTTTTGCTCCCGCTAAAGGCTTTTATCAAATAAAAAAC
TACTAGTCTCATATAATTATCATTATTATTTATATGTACGTATATGTTTTGCTTATAAAT
ATTATTAAAAATAAATTTCAATATTCATTGTACAATGCTCGATGCTTCAATTTATTTCTA
TGTTACTCTTT
>g11530.t11 Gene=g11530 Length=363
MCATISPSESNYVETISTLRYAGRAKSIQNHAHMNFDPKDALLKHFQQEIEELKRQLEEG
VFEIGGDEIDADENDDLSEESDIEIENEKEKSKEKSKKKKAKANKDEMHKEKSDAEKELL
ELKAQEHEKALKVAQSEQDIIRAKLQSLENKILNGGENLLEKANQQEQLLEKSIAELEAT
NKKEQELQQTLQKIEAERIDIEERYSSLQEECVGKTKKLQKVMQMLMGLKSELADQQQEQ
QREKEGIYENIRSLSRELALCELVINNYIPKEYQTLIDKFTYWNEEIGEWQLKCVAYTGN
NMRKNINEQQKNAKEEKEYVDLSHVYLSYNVDGLTEPVRGKTSRPKTSHSGVPRYYQRIN
NIN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g11530.t11 | Coils | Coil | Coil | 43 | 63 | - |
| 10 | g11530.t11 | Coils | Coil | Coil | 91 | 151 | - |
| 8 | g11530.t11 | Coils | Coil | Coil | 160 | 211 | - |
| 9 | g11530.t11 | Coils | Coil | Coil | 219 | 257 | - |
| 7 | g11530.t11 | Gene3D | G3DSA:1.20.58.1980 | - | 1 | 65 | 3.6E-12 |
| 5 | g11530.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 83 | - |
| 6 | g11530.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 115 | - |
| 4 | g11530.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 115 | - |
| 1 | g11530.t11 | PANTHER | PTHR24115:SF472 | KINESIN-LIKE PROTEIN KIF3A | 1 | 332 | 1.5E-59 |
| 2 | g11530.t11 | PANTHER | PTHR24115 | KINESIN-RELATED | 1 | 332 | 1.5E-59 |
| 12 | g11530.t11 | ProSiteProfiles | PS50067 | Kinesin motor domain profile. | 1 | 28 | 15.11 |
| 3 | g11530.t11 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 58 | 1.7E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1990939 | NA | NA |
| GO:0007018 | microtubule-based movement | BP |
| GO:0005524 | ATP binding | MF |
| GO:0008017 | microtubule binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
