Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Adenylate kinase 7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1154 g1154.t1 isoform g1154.t1 8413515 8416173
chr_3 g1154 g1154.t1 exon g1154.t1.exon1 8413515 8414366
chr_3 g1154 g1154.t1 cds g1154.t1.CDS1 8413515 8414366
chr_3 g1154 g1154.t1 exon g1154.t1.exon2 8414714 8414986
chr_3 g1154 g1154.t1 cds g1154.t1.CDS2 8414714 8414986
chr_3 g1154 g1154.t1 exon g1154.t1.exon3 8415040 8415491
chr_3 g1154 g1154.t1 cds g1154.t1.CDS3 8415040 8415491
chr_3 g1154 g1154.t1 exon g1154.t1.exon4 8415550 8415844
chr_3 g1154 g1154.t1 cds g1154.t1.CDS4 8415550 8415844
chr_3 g1154 g1154.t1 exon g1154.t1.exon5 8415904 8416173
chr_3 g1154 g1154.t1 cds g1154.t1.CDS5 8415904 8416173
chr_3 g1154 g1154.t1 TSS g1154.t1 NA NA
chr_3 g1154 g1154.t1 TTS g1154.t1 NA NA

Sequences

>g1154.t1 Gene=g1154 Length=2142
ATGGGTGATCACATTGAAGATATTCCTGATGCAACAAATTTTGAGTATATCACACAACAA
ATTACTAAAATCAAGAGAATTTTTATATCATTTGCAAACTCTTATCATGCAAAAGCAATT
GTTTCATGTATCTTTGAAAATAATGATACACACATCATCATTTATGGCACATCTCAAAAT
TATAAAAAGAATATAGAACAAGTTGAAATACTGAGTACACATGAAGATATTTTATCATTG
TTAGAACAACTTGATGTGATAATTTTGGACATTTCACAAAATCGCACACAACTGAATGAA
GCAAAAATTATTTTAGATTATCTAGAGGAAAAAGTTGTTTCAAACACAGAAATTAAAATT
CATTTAATTTTAATTTCAACAATTATGACATGGGCAAATACTCCGCAAAATGATAATTTA
TCGGACATAGATTATTGCAAACGCCAACCACATCCATGCTTTCATGAACATTTTATGATA
GAGAGAAGAGTATTGAATATGCAAAAAAGATTTCCAGGAAAAATTCATAGTGTGGTCGTA
TGTCCAGGAATAATATATGGCGAAGAACAAGATATATTTGAGTACATTTTTAAAGAGTGT
TATTTCAATTATCCAGAAATAGAAATTTTCTTACCAGCAACCAATATATTGCCAATAATC
TATATATATGATTTTGCTAAAATTATTATTCAAATAATTGAACAGACTTGTGATTCAAAA
TATATTCTTGCAGTTCAACCTGAAACTCTCAGCGTCTTTGAGATAGTAAATATATTTTCG
AAAAATTCTGAATCACGAATAAGAATATGTGAGCAAGATGAGATATTTACCATGAGAGAG
GATTTTATTACTCAACGTGTTTTCAATCACTTGACACTTAATTTACGATTATATTCAGAA
TATCTCAGTGATTTTTCATTTGAAATTACTGGTTTGAATCTTAATTCGCATGGTGAGAAA
ATAATTCAACAGTTTTATAAGTCAAGAAATCTCAAACCATTGAAAATATTGATCGATGGA
TCATCATTTACTCCACAATGTAAATTAGCAAAATTTTTCAGTGATCACTATTCTATTCAT
CAGATTGAAAAGAAAAATTTTCTCAACAACTATAAATGTCGACTTGATCGAAAGATTTTT
TCTACTCAACAATATCTTGAGAAAATGAGAAAAATTTTACCTAAAATAAGTGAGACTTTG
GAAATCTTGCCATTCCTAAATGATGCAGAGGAAGAAATTAAAAAATGGACCAGTCAGTGT
GATCAAATTGGCGTAATGCTTGCTTCAGAAGTAGAAATTTCTTTCGATGAAATGAAGGAA
TTTATAATGGAAAGACTTCTCTCACATGCATGCATTAAAAATCAAGGATATGTTATGAGT
GATTTTCAATTAAATAATTTGGAAGCAAATGAAATTTTTGATAAAGATACTAAACCAGAT
TTTGTAATAATTTTAAACAGAATGATGGAACTCGATAAAGAATGCTTAGAAATAGAAGAT
AAAAATGATGAATATTTTGATCGTCAAAGCAAAAAAGATGATGAAAGTGAAATGCAACGA
AAGTTAAAAATTTATTATGAATCTCAATATGATGATACTTCAATAGAAAATTACTTTCTT
GATCATGGAATTGTTCCTTTTGTTATTAATATTGATCAAAATATAAGCTCAGATAAATTG
TCAAGCATTTTTGATGATCTGAAAACCAAAATTGGTCCACATATGACTTATGAACTAAGT
CCTAAAGAAATGAAAGAAATCAATAAAATGAAACAATTGGCTTACGAAAAAGAATTAGCC
GAAAAGCAAGAAATAGAACGTAAAAAAGCTCAAAAGAAAAAAGAGGAACAAGAAAAACTA
TTGGAAGTTATAAATAACGAATTATGTGAGAAAAAGAAAGCGGAGATAAAAGAGATTGAA
AAGCGCAGTGCACCTGTTCGTGAATATTTAAATACACATGTTTTTCCTCATCTCATTGAT
GGCATTCTTGAATTAACAACTTTACGTCCTAATGATCCTAACAAATATTTAAGTGATTAT
ATGTTTCAAAAACACTTCAAAGATGAAAGTAGTCAAGCTCAAATGATTGAAGTTGATGAA
GAAATTGTAGAAGAGTTCAAAAAGCTTTCTCAATGTGAATAA

>g1154.t1 Gene=g1154 Length=713
MGDHIEDIPDATNFEYITQQITKIKRIFISFANSYHAKAIVSCIFENNDTHIIIYGTSQN
YKKNIEQVEILSTHEDILSLLEQLDVIILDISQNRTQLNEAKIILDYLEEKVVSNTEIKI
HLILISTIMTWANTPQNDNLSDIDYCKRQPHPCFHEHFMIERRVLNMQKRFPGKIHSVVV
CPGIIYGEEQDIFEYIFKECYFNYPEIEIFLPATNILPIIYIYDFAKIIIQIIEQTCDSK
YILAVQPETLSVFEIVNIFSKNSESRIRICEQDEIFTMREDFITQRVFNHLTLNLRLYSE
YLSDFSFEITGLNLNSHGEKIIQQFYKSRNLKPLKILIDGSSFTPQCKLAKFFSDHYSIH
QIEKKNFLNNYKCRLDRKIFSTQQYLEKMRKILPKISETLEILPFLNDAEEEIKKWTSQC
DQIGVMLASEVEISFDEMKEFIMERLLSHACIKNQGYVMSDFQLNNLEANEIFDKDTKPD
FVIILNRMMELDKECLEIEDKNDEYFDRQSKKDDESEMQRKLKIYYESQYDDTSIENYFL
DHGIVPFVINIDQNISSDKLSSIFDDLKTKIGPHMTYELSPKEMKEINKMKQLAYEKELA
EKQEIERKKAQKKKEEQEKLLEVINNELCEKKKAEIKEIEKRSAPVREYLNTHVFPHLID
GILELTTLRPNDPNKYLSDYMFQKHFKDESSQAQMIEVDEEIVEEFKKLSQCE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g1154.t1 Coils Coil Coil 488 508 -
8 g1154.t1 Coils Coil Coil 593 627 -
5 g1154.t1 Gene3D G3DSA:3.40.50.720 - 26 290 3.1E-9
6 g1154.t1 Gene3D G3DSA:1.20.890.10 - 638 690 1.1E-10
2 g1154.t1 PANTHER PTHR23359 NUCLEOTIDE KINASE 103 677 1.7E-40
3 g1154.t1 PANTHER PTHR23359:SF105 ADENYLATE KINASE 7 103 677 1.7E-40
1 g1154.t1 Pfam PF05186 Dpy-30 motif 645 683 7.0E-9
4 g1154.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 25 273 2.15E-12

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0004127 cytidylate kinase activity MF
GO:0004017 adenylate kinase activity MF
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values