General information for g11560.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Soluble calcium-activated nucleotidase 1.
Parent gene
- The parent gene g11560 is located on chr_1: 17143491..17144771 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11560 | g11560.t2 | TSS | g11560.t2 | 17143381 | 17143381 |
| chr_1 | g11560 | g11560.t2 | isoform | g11560.t2 | 17143491 | 17144771 |
| chr_1 | g11560 | g11560.t2 | exon | g11560.t2.exon1 | 17143491 | 17144771 |
| chr_1 | g11560 | g11560.t2 | cds | g11560.t2.CDS1 | 17144022 | 17144771 |
| chr_1 | g11560 | g11560.t2 | TTS | g11560.t2 | 17144833 | 17144833 |
Sequences
>g11560.t2 Gene=g11560 Length=1281
ATGAAGAAAGCTGCATCATTTAATGTATTAGGCGAAGGAGCTCTTCAAAATCGATGGCGA
CAAAATGGAGCTAGTTTTATTCGGATTAGGAAAAATAAATTTAGATTTAATTTTATATAT
CTAATAGCTATTGCTTTGGTTATGCTAATTGTGTACATTACTCTGCCAGCTGGTCGTCAT
ATTACATCATATCGCCATTTACATGCAGACAAAGATACAAATACATCGCCTATTTTTAGC
AATATAGTTGTAAATTATAATGCAGTTTATCCTCTAACGAAACCAATTGTGAATGCTCAT
CAGAAGACTACTTTATATCGCATAGGTCTAATAGCAGATCTCGATACAAATTCAAAACGC
AGTAAAAAGGACGTGTATTCGAGTTTTTATATGACAGGATGGCTCACAATTTCTAGTACT
CACACGTCTTTTGAATTCAAGTTTGATGAAATTACGAAAGAAATCACGAGCGGGTACTCG
TTGAAAGGTAATAATTTATGACATTCACTTTATCAAATAAATATTTACCTCATGAATGGC
TTTGTTTTAGGACGTGGCATGGAACTTTCTGAGCTAGTCACGTTTAATGGGAAACTTCTG
ACATTTGATGATCGCACTGGGATTGTTTTTGAAATCAATACACAAGATTCGAGTTTATCA
CCATGGGTTATACTTACAGACGGAGAGAGAATCTCACCTAAAGGTTTCAAATCTGAATGG
GCTACAGTAAAAAATCAACAATTATTTGTTGGAAGCATGGGTAAAGAGTGGACAAATGCA
GGAGGCGATTTTGAAAATAATAATCCTATGATGATGAAAGTTATTAGTGTGAATGGTGAA
GTGAAAACTCTCAATTGGGTAAAAAATTACAAGGCAATTAGAAGTGCATTGAAGATTGAG
TGGCCAGGGTATTTGATCCATGAGTCTGGTGCATATAGCGACTTTCAAAAAAAGTGGTTC
TTTTTACCAAGACGATGCTCAACAACAAAATATAACGAGACACTTGATGAGACAAAGGGT
TGCAACTACCTGATAATTGCAGATGAAACATTTAGTCAAATTCAAACAGTACAGATTGGT
GAATTAAAACCTTCACGAGGATACTCCTCTTTTAAATTTGTTCCTGGAACACATGATAGT
ATTATTGTTGCGTTAAAAACAGAGGAATTGAATGGATCAACGAGCACTTTTATTACAGTG
TTTGATATTAAAGGTAATATTCTTCATCCGGATGAAAAAATTCAGACAGAATTCAAATAT
GAAGGCTTCGAGTTTATTTAG
>g11560.t2 Gene=g11560 Length=249
MNGFVLGRGMELSELVTFNGKLLTFDDRTGIVFEINTQDSSLSPWVILTDGERISPKGFK
SEWATVKNQQLFVGSMGKEWTNAGGDFENNNPMMMKVISVNGEVKTLNWVKNYKAIRSAL
KIEWPGYLIHESGAYSDFQKKWFFLPRRCSTTKYNETLDETKGCNYLIIADETFSQIQTV
QIGELKPSRGYSSFKFVPGTHDSIIVALKTEELNGSTSTFITVFDIKGNILHPDEKIQTE
FKYEGFEFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11560.t2 | Gene3D | G3DSA:2.120.10.100 | - | 5 | 249 | 0 |
| 2 | g11560.t2 | PANTHER | PTHR13023:SF3 | SOLUBLE CALCIUM-ACTIVATED NUCLEOTIDASE 1 | 7 | 249 | 0 |
| 3 | g11560.t2 | PANTHER | PTHR13023 | APYRASE | 7 | 249 | 0 |
| 1 | g11560.t2 | Pfam | PF06079 | Apyrase | 7 | 249 | 0 |
| 4 | g11560.t2 | SUPERFAMILY | SSF101887 | Apyrase | 7 | 249 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005509 | calcium ion binding | MF |
| GO:0017110 | nucleoside-diphosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
