General information for g11568.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Disheveled-associated activator of morphogenesis 1.
Parent gene
- The parent gene g11568 is located on chr_1: 17186776..17187982 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11568 | g11568.t3 | isoform | g11568.t3 | 17186225 | 17187982 |
| chr_1 | g11568 | g11568.t3 | exon | g11568.t3.exon1 | 17186225 | 17186462 |
| chr_1 | g11568 | g11568.t3 | TSS | g11568.t3 | 17186263 | 17186263 |
| chr_1 | g11568 | g11568.t3 | cds | g11568.t3.CDS1 | 17186440 | 17186462 |
| chr_1 | g11568 | g11568.t3 | exon | g11568.t3.exon2 | 17186533 | 17186694 |
| chr_1 | g11568 | g11568.t3 | cds | g11568.t3.CDS2 | 17186533 | 17186694 |
| chr_1 | g11568 | g11568.t3 | exon | g11568.t3.exon3 | 17186776 | 17187339 |
| chr_1 | g11568 | g11568.t3 | cds | g11568.t3.CDS3 | 17186776 | 17187339 |
| chr_1 | g11568 | g11568.t3 | exon | g11568.t3.exon4 | 17187398 | 17187569 |
| chr_1 | g11568 | g11568.t3 | cds | g11568.t3.CDS4 | 17187398 | 17187569 |
| chr_1 | g11568 | g11568.t3 | exon | g11568.t3.exon5 | 17187637 | 17187784 |
| chr_1 | g11568 | g11568.t3 | cds | g11568.t3.CDS5 | 17187637 | 17187784 |
| chr_1 | g11568 | g11568.t3 | exon | g11568.t3.exon6 | 17187867 | 17187982 |
| chr_1 | g11568 | g11568.t3 | cds | g11568.t3.CDS6 | 17187867 | 17187982 |
| chr_1 | g11568 | g11568.t3 | TTS | g11568.t3 | 17188074 | 17188074 |
Sequences
>g11568.t3 Gene=g11568 Length=1400
TGTAAGTGAAAGTGAAAATATATTAAAAATTATTTTTTTATTATGTAACTTGCCAGAAAT
TACTACATTAACAAAATCATTTATAAATGTCAATTTAGGTTGATGGATCAAGCATAGAAG
ACTTGCGGTTAATTGGTAAAGGCAAAACAAAAATACTCTCTGTTATCGATGGTAGACGAG
CACAAAATTGCACAATTTTACTCAGTAAATTGAAAATGACTGATGATGAAATTTCAAAAG
CGATACTGTCGATGGATAGTAATGATCAGTTACCGATCGATATGGTTGAACAACTACTCA
AGTTCACACCAACAACAGAGGAGCGTGTTTTGCTAGATGAACATTCGGAAGACATTGATT
CGCTAGCGAGAGCTGACCGATTTTTATATGAAATTTCCAAAATACATCATTATGAACAGC
GGTTAAAAAGCTTACATTACAAGAAGCGTTTTAATGTGACCCTTAATGACCTTTTTCCAC
GCATCAATAATGTAATGGAAGCTAGTCGAGAGGTCTCTCGAAGTCGACGATTAAGGAAAC
TTTTAGAATTGGTGCTAGCACTAGGAAACTATATGAATCGTGGTGCTCGTGGTCAAGCAT
TAGGTTTTCGCATACAATCGCTTAACAAACTTGTGGATACAAAAGCAAATACCAAAGCGA
AAGGAACAACTCTTCTTCACTATCTCGTGCAAGTAATTGAGGCAAAACATAAAGATATAT
TGCGTTTGGAAGAAGACATTCCACATGTTCATATGGCTGCAAAAGTGAGTCTTGGTGAAA
TGGAAAAAGATATTGCAAATTTGAGAAGTGGCTTAGCCGATGTCGCAAGAGAAATTGAAT
TCCATCGAAGTGCCGGATCAAACGTTCCGGAAGATAGATTTTTAGTTGTTATGCGTGATT
TCTATGCACAAGCTTCAATTAGATTTGCTGAGTTAGAAGACAAATACCAAGACATGAAAA
CTAGATTTGATCGATGTGTAAGGTTATTTGGTGAAGATGGATCAGTCATACAACCAGATG
AATTTTTTGGCATTTTCGATCAATTCTTAGTTCAATTCAGTGAAGCTCGTAATGATAATG
AGAACTTTAAAAAGAGAGCAGAAGAAGAGGAGAAAAGAATTAAGCAAGAAGCTGAGATGA
AGAAGCGAACAATAGAGAGAAAATCAAAAGATGGATTTTTAAGCTCAGTAGCGAAAAATT
TGGGATTGAAATCAAAAGAAGAGCAACATCAACAGAAAGTCGAAACTAGAGAGTTTGATG
ATTTGATTGAAACACTGCGAACTGGTGATGTTTTCCAAGGTGAGAAGTATAAGAGATCGA
GAAAATCGAAAGCCGGCACTTCACCGCCTCGAAATCAACGTTCAAATGGTGACAGTAATT
CTCGAGAAAGAATTTTTTAA
>g11568.t3 Gene=g11568 Length=394
MTDDEISKAILSMDSNDQLPIDMVEQLLKFTPTTEERVLLDEHSEDIDSLARADRFLYEI
SKIHHYEQRLKSLHYKKRFNVTLNDLFPRINNVMEASREVSRSRRLRKLLELVLALGNYM
NRGARGQALGFRIQSLNKLVDTKANTKAKGTTLLHYLVQVIEAKHKDILRLEEDIPHVHM
AAKVSLGEMEKDIANLRSGLADVAREIEFHRSAGSNVPEDRFLVVMRDFYAQASIRFAEL
EDKYQDMKTRFDRCVRLFGEDGSVIQPDEFFGIFDQFLVQFSEARNDNENFKKRAEEEEK
RIKQEAEMKKRTIERKSKDGFLSSVAKNLGLKSKEEQHQQKVETREFDDLIETLRTGDVF
QGEKYKRSRKSKAGTSPPRNQRSNGDSNSRERIF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11568.t3 | Coils | Coil | Coil | 186 | 206 | - |
| 6 | g11568.t3 | Coils | Coil | Coil | 230 | 250 | - |
| 7 | g11568.t3 | Coils | Coil | Coil | 281 | 316 | - |
| 5 | g11568.t3 | Gene3D | G3DSA:1.20.58.2220 | - | 1 | 320 | 5.5E-107 |
| 10 | g11568.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 394 | - |
| 2 | g11568.t3 | PANTHER | PTHR45725 | FORMIN HOMOLOGY 2 FAMILY MEMBER | 1 | 362 | 2.9E-139 |
| 3 | g11568.t3 | PANTHER | PTHR45725:SF7 | DISHEVELED-ASSOCIATED ACTIVATOR OF MORPHOGENESIS 2 | 1 | 362 | 2.9E-139 |
| 1 | g11568.t3 | Pfam | PF02181 | Formin Homology 2 Domain | 1 | 281 | 2.1E-84 |
| 11 | g11568.t3 | ProSiteProfiles | PS51444 | Formin homology-2 (FH2) domain profile. | 1 | 307 | 60.43 |
| 9 | g11568.t3 | SMART | SM00498 | it6_source | 1 | 362 | 9.8E-64 |
| 4 | g11568.t3 | SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 2 | 311 | 1.96E-80 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
