General information for g11568.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Disheveled-associated activator of morphogenesis 1-A.
Parent gene
- The parent gene g11568 is located on chr_1: 17186776..17187982 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11568 | g11568.t4 | TSS | g11568.t4 | 17186315 | 17186315 |
| chr_1 | g11568 | g11568.t4 | isoform | g11568.t4 | 17186531 | 17187335 |
| chr_1 | g11568 | g11568.t4 | exon | g11568.t4.exon1 | 17186531 | 17186694 |
| chr_1 | g11568 | g11568.t4 | cds | g11568.t4.CDS1 | 17186546 | 17186694 |
| chr_1 | g11568 | g11568.t4 | exon | g11568.t4.exon2 | 17186776 | 17187335 |
| chr_1 | g11568 | g11568.t4 | cds | g11568.t4.CDS2 | 17186776 | 17187334 |
| chr_1 | g11568 | g11568.t4 | TTS | g11568.t4 | 17188074 | 17188074 |
Sequences
>g11568.t4 Gene=g11568 Length=724
AGAGCGATACTGTCGATGGATAGTAATGATCAGTTACCGATCGATATGGTTGAACAACTA
CTCAAGTTCACACCAACAACAGAGGAGCGTGTTTTGCTAGATGAACATTCGGAAGACATT
GATTCGCTAGCGAGAGCTGACCGATTTTTATATGAAATTTCCAAAATACATCATTATGAA
CAGCGGTTAAAAAGCTTACATTACAAGAAGCGTTTTAATGTGACCCTTAATGACCTTTTT
CCACGCATCAATAATGTAATGGAAGCTAGTCGAGAGGTCTCTCGAAGTCGACGATTAAGG
AAACTTTTAGAATTGGTGCTAGCACTAGGAAACTATATGAATCGTGGTGCTCGTGGTCAA
GCATTAGGTTTTCGCATACAATCGCTTAACAAACTTGTGGATACAAAAGCAAATACCAAA
GCGAAAGGAACAACTCTTCTTCACTATCTCGTGCAAGTAATTGAGGCAAAACATAAAGAT
ATATTGCGTTTGGAAGAAGACATTCCACATGTTCATATGGCTGCAAAAGTGAGTCTTGGT
GAAATGGAAAAAGATATTGCAAATTTGAGAAGTGGCTTAGCCGATGTCGCAAGAGAAATT
GAATTCCATCGAAGTGCCGGATCAAACGTTCCGGAAGATAGATTTTTAGTTGTTATGCGT
GATTTCTATGCACAAGCTTCAATTAGATTTGCTGAGTTAGAAGACAAATACCAAGACATG
AAAA
>g11568.t4 Gene=g11568 Length=236
MDSNDQLPIDMVEQLLKFTPTTEERVLLDEHSEDIDSLARADRFLYEISKIHHYEQRLKS
LHYKKRFNVTLNDLFPRINNVMEASREVSRSRRLRKLLELVLALGNYMNRGARGQALGFR
IQSLNKLVDTKANTKAKGTTLLHYLVQVIEAKHKDILRLEEDIPHVHMAAKVSLGEMEKD
IANLRSGLADVAREIEFHRSAGSNVPEDRFLVVMRDFYAQASIRFAELEDKYQDMK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11568.t4 | Coils | Coil | Coil | 174 | 194 | - |
| 6 | g11568.t4 | Gene3D | G3DSA:1.20.58.2220 | - | 1 | 236 | 5.2E-81 |
| 2 | g11568.t4 | PANTHER | PTHR45725 | FORMIN HOMOLOGY 2 FAMILY MEMBER | 1 | 236 | 5.1E-95 |
| 3 | g11568.t4 | PANTHER | PTHR45725:SF7 | DISHEVELED-ASSOCIATED ACTIVATOR OF MORPHOGENESIS 2 | 1 | 236 | 5.1E-95 |
| 1 | g11568.t4 | Pfam | PF02181 | Formin Homology 2 Domain | 3 | 236 | 7.0E-70 |
| 8 | g11568.t4 | ProSiteProfiles | PS51444 | Formin homology-2 (FH2) domain profile. | 1 | 236 | 49.112 |
| 5 | g11568.t4 | SMART | SM00498 | it6_source | 1 | 236 | 3.0E-5 |
| 4 | g11568.t4 | SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 5 | 235 | 4.45E-64 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
