General information for g11568.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Disheveled-associated activator of morphogenesis 1.
Parent gene
- The parent gene g11568 is located on chr_1: 17186776..17187982 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11568 | g11568.t5 | TSS | g11568.t5 | 17186315 | 17186315 |
| chr_1 | g11568 | g11568.t5 | isoform | g11568.t5 | 17186776 | 17187982 |
| chr_1 | g11568 | g11568.t5 | exon | g11568.t5.exon1 | 17186776 | 17187339 |
| chr_1 | g11568 | g11568.t5 | cds | g11568.t5.CDS1 | 17186870 | 17187339 |
| chr_1 | g11568 | g11568.t5 | exon | g11568.t5.exon2 | 17187398 | 17187569 |
| chr_1 | g11568 | g11568.t5 | cds | g11568.t5.CDS2 | 17187398 | 17187569 |
| chr_1 | g11568 | g11568.t5 | exon | g11568.t5.exon3 | 17187637 | 17187784 |
| chr_1 | g11568 | g11568.t5 | cds | g11568.t5.CDS3 | 17187637 | 17187784 |
| chr_1 | g11568 | g11568.t5 | exon | g11568.t5.exon4 | 17187867 | 17187982 |
| chr_1 | g11568 | g11568.t5 | cds | g11568.t5.CDS4 | 17187867 | 17187982 |
| chr_1 | g11568 | g11568.t5 | TTS | g11568.t5 | 17188074 | 17188074 |
Sequences
>g11568.t5 Gene=g11568 Length=1000
AATACATCATTATGAACAGCGGTTAAAAAGCTTACATTACAAGAAGCGTTTTAATGTGAC
CCTTAATGACCTTTTTCCACGCATCAATAATGTAATGGAAGCTAGTCGAGAGGTCTCTCG
AAGTCGACGATTAAGGAAACTTTTAGAATTGGTGCTAGCACTAGGAAACTATATGAATCG
TGGTGCTCGTGGTCAAGCATTAGGTTTTCGCATACAATCGCTTAACAAACTTGTGGATAC
AAAAGCAAATACCAAAGCGAAAGGAACAACTCTTCTTCACTATCTCGTGCAAGTAATTGA
GGCAAAACATAAAGATATATTGCGTTTGGAAGAAGACATTCCACATGTTCATATGGCTGC
AAAAGTGAGTCTTGGTGAAATGGAAAAAGATATTGCAAATTTGAGAAGTGGCTTAGCCGA
TGTCGCAAGAGAAATTGAATTCCATCGAAGTGCCGGATCAAACGTTCCGGAAGATAGATT
TTTAGTTGTTATGCGTGATTTCTATGCACAAGCTTCAATTAGATTTGCTGAGTTAGAAGA
CAAATACCAAGACATGAAAACTAGATTTGATCGATGTGTAAGGTTATTTGGTGAAGATGG
ATCAGTCATACAACCAGATGAATTTTTTGGCATTTTCGATCAATTCTTAGTTCAATTCAG
TGAAGCTCGTAATGATAATGAGAACTTTAAAAAGAGAGCAGAAGAAGAGGAGAAAAGAAT
TAAGCAAGAAGCTGAGATGAAGAAGCGAACAATAGAGAGAAAATCAAAAGATGGATTTTT
AAGCTCAGTAGCGAAAAATTTGGGATTGAAATCAAAAGAAGAGCAACATCAACAGAAAGT
CGAAACTAGAGAGTTTGATGATTTGATTGAAACACTGCGAACTGGTGATGTTTTCCAAGG
TGAGAAGTATAAGAGATCGAGAAAATCGAAAGCCGGCACTTCACCGCCTCGAAATCAACG
TTCAAATGGTGACAGTAATTCTCGAGAAAGAATTTTTTAA
>g11568.t5 Gene=g11568 Length=301
MEASREVSRSRRLRKLLELVLALGNYMNRGARGQALGFRIQSLNKLVDTKANTKAKGTTL
LHYLVQVIEAKHKDILRLEEDIPHVHMAAKVSLGEMEKDIANLRSGLADVAREIEFHRSA
GSNVPEDRFLVVMRDFYAQASIRFAELEDKYQDMKTRFDRCVRLFGEDGSVIQPDEFFGI
FDQFLVQFSEARNDNENFKKRAEEEEKRIKQEAEMKKRTIERKSKDGFLSSVAKNLGLKS
KEEQHQQKVETREFDDLIETLRTGDVFQGEKYKRSRKSKAGTSPPRNQRSNGDSNSRERI
F
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11568.t5 | Coils | Coil | Coil | 93 | 113 | - |
| 7 | g11568.t5 | Coils | Coil | Coil | 137 | 157 | - |
| 6 | g11568.t5 | Coils | Coil | Coil | 188 | 223 | - |
| 5 | g11568.t5 | Gene3D | G3DSA:1.20.58.2220 | - | 1 | 227 | 4.2E-74 |
| 15 | g11568.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 301 | - |
| 2 | g11568.t5 | PANTHER | PTHR45725 | FORMIN HOMOLOGY 2 FAMILY MEMBER | 1 | 270 | 9.3E-93 |
| 3 | g11568.t5 | PANTHER | PTHR45725:SF7 | DISHEVELED-ASSOCIATED ACTIVATOR OF MORPHOGENESIS 2 | 1 | 270 | 9.3E-93 |
| 1 | g11568.t5 | Pfam | PF02181 | Formin Homology 2 Domain | 2 | 188 | 7.4E-55 |
| 10 | g11568.t5 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 33 | - |
| 11 | g11568.t5 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 15 | - |
| 12 | g11568.t5 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 16 | 24 | - |
| 13 | g11568.t5 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 25 | 33 | - |
| 9 | g11568.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 34 | 301 | - |
| 16 | g11568.t5 | ProSiteProfiles | PS51444 | Formin homology-2 (FH2) domain profile. | 1 | 214 | 43.62 |
| 14 | g11568.t5 | SMART | SM00498 | it6_source | 1 | 269 | 3.0E-4 |
| 4 | g11568.t5 | SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 2 | 218 | 1.27E-54 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
