General information for g11582.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11582 is located on chr_1: 17322310..17322697 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11582 | g11582.t2 | isoform | g11582.t2 | 17313933 | 17316951 |
| chr_1 | g11582 | g11582.t2 | exon | g11582.t2.exon1 | 17313933 | 17314159 |
| chr_1 | g11582 | g11582.t2 | cds | g11582.t2.CDS1 | 17314157 | 17314159 |
| chr_1 | g11582 | g11582.t2 | exon | g11582.t2.exon2 | 17316413 | 17316951 |
| chr_1 | g11582 | g11582.t2 | cds | g11582.t2.CDS2 | 17316413 | 17316874 |
| chr_1 | g11582 | g11582.t2 | TSS | g11582.t2 | NA | NA |
| chr_1 | g11582 | g11582.t2 | TTS | g11582.t2 | NA | NA |
Sequences
>g11582.t2 Gene=g11582 Length=766
ATTTTTATGTTTCTAATTCAAAATCATTACAGCAACAGCAACAATTACATTCCAATCCTT
TTGATAACACTCCATTAATGTTGATAAATTCTGGTCCACAAAGTTTCATTGAATTGAGTA
ATCAGTATGAAAGTGATATGTTTAGACAAGTTAATTATATGGAGCAAAATATCCCTCAAC
CAACACCACCACAACTTCCACCAAAAACACCAAATCGAACTCCAGTCATGGGAACAAAAA
CGATTCATCGTAGAACGCTTTCAAACACTTCTTCACAGTCACAATTCACAAATAGTAATA
ATAATAGTCGAAATATATATACCAATTCAAGAATCGAAGAGATAGATTATCGTTTTCATA
ATTTTAATATTAATAATGCCATTAATCGTGAACCACTTCAATTTCATTCAGTGCCATATA
GCTGCAATTTCTCAGATCAGCAACAAATACCAAATCGAATGCGTTTATATGAGAATGTTA
GCCATTTTCAACAAAATCTTCAGTCTATGTCATTACCACCATCACATTGTCAAACACCTT
AACGTTGTTTTGTGATGTTGGATTTAAATCTGTTATCACTACACCATCCGCCAAGCATTT
CATCAAAGCATCGGTCAATATTAATTCTTTTTCATACAGACTTTTCACAATAACTTGAAG
AAATTTTTTGTTTCCACTTGAATGCAAACGACAGCTGGCTGTCATTAATGGAAGAAATTT
TAATGGAATTTGAATATCTGATTCAGACCACGGACAATTTAATAAT
>g11582.t2 Gene=g11582 Length=154
MLINSGPQSFIELSNQYESDMFRQVNYMEQNIPQPTPPQLPPKTPNRTPVMGTKTIHRRT
LSNTSSQSQFTNSNNNSRNIYTNSRIEEIDYRFHNFNINNAINREPLQFHSVPYSCNFSD
QQQIPNRMRLYENVSHFQQNLQSMSLPPSHCQTP
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed